Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1672 ATGAATGCTCCGACGAAGAAAAAGATTCAGAAGAAGTGCAAAATCAGAGGCTATAATATCAAACCCGAAGCCCTAGACGAGATCCTCTCATTCGTTATTCGATTCGAACTCACCGAACAAGACGAAGCCATCGAGCTCGTCCTCGAACAGCTTGAACACGAATCCATCAAATCTACAGTAATCGACGTGGAGCCAGTTCAACGAGTGGTGAACTTGCTATTGGAAGCCGACGCGAAGGAGGAGGAAACTTTTGAAGCCTTCGCTTCCTCTTCTTCCGCTATTGCCGTCATTGACGTGTTCGATGTTCCCAGATATAAATATGACGCTATCAGAAGGAATTTCTACCGGTGCCCAGAAAGCTTACCTCTTAAGGGAGACGCAGCAGCCAAATCTCGTAACATGTCCCTATCTAAAGACAACAACAGGGTCTCCGAGAGTCGTGACCAAAATTTTTCGAAACCTGCTTTTGAGTCTGAACGTTCCCAATTCAGGAGTCGTGAGATATCTCCTATTCAATCTCTAGTTGGGCAAAAAGAGAACACCATAGTTGTGGCTGAAGGCGAGATGGTATCAGCTGAGGGTATTTTTCAGATTTATTCATGTGGATTTCCTCCATTAGAGGATAGAGATAAATCACTTCAAGGCTTAGCAGCCCATTGGACTTTTTTGGTGGTGACCAAGAAGAGGTATTTTGAAATGCTATGGAAAGCTAGAGATGTTCTTGATGCTTTGAGAGCGAGGAAGTCGTTCCTTCCTTATTGTTTTTCATGGGAGACTTCCTGTTCTGAGCCATATACACAAGCATCAGGCTCTTCTCGCATCCTGAGGTTGCAGTTTGGCAGGCTAGGGAAAATTATTGCAGCCCGTTCAAGGTTAAAAGAGAACAGCCGATTTCTTTTTATTCCAGGTCCTTCAACAGTTCTTCCTAGGTGTAGATTACCTAAATGTTTAACTGAGGAGCTCCAAAAGTATATTCCCGATGCCATATTTTCAAGCAATCCATGCAGGGTAAAATTCTATACACAAGAAATTGTATTTTTCCGCCAGGATCAGCTGTATAGCATGAGTCGTTCTTCTCTAGTGCCACCTTCTGTGACAGAAACTACTGATCCTTTTCAGCATTATGTTGCCACCATAACCCACCAGAGTCATCTCTGTCCACTGCCTCTAACTAAACAGCCCATCATATGGAATTATGACCATGGCCTTGATTTATATCCAACTCCGCACACGGTACCATTTATAGTTAATTACCCTGGAATCTTACAAGACTACGACCAAGACGACAACACTAACGTCTATCTCTTAGGAGAGAGAAGTCCACAGAAGGCTTTTAAATACACAGGAACCACTTGTTTTAATACCGGATCCTTCTCGAGGGATAGTACATTTGTAGTGTACCGTCCTTGTTCTCAGGAGGTTGAATTGTCATCCTTGTGA 1440 0.434 MNAPTKKKIQKKCKIRGYNIKPEALDEILSFVIRFELTEQDEAIELVLEQLEHESIKSTVIDVEPVQRVVNLLLEADAKEEETFEAFASSSSAIAVIDVFDVPRYKYDAIRRNFYRCPESLPLKGDAAAKSRNMSLSKDNNRVSESRDQNFSKPAFESERSQFRSREISPIQSLVGQKENTIVVAEGEMVSAEGIFQIYSCGFPPLEDRDKSLQGLAAHWTFLVVTKKRYFEMLWKARDVLDALRARKSFLPYCFSWETSCSEPYTQASGSSRILRLQFGRLGKIIAARSRLKENSRFLFIPGPSTVLPRCRLPKCLTEELQKYIPDAIFSSNPCRVKFYTQEIVFFRQDQLYSMSRSSLVPPSVTETTDPFQHYVATITHQSHLCPLPLTKQPIIWNYDHGLDLYPTPHTVPFIVNYPGILQDYDQDDNTNVYLLGERSPQKAFKYTGTTCFNTGSFSRDSTFVVYRPCSQEVELSSL* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1672 479 MobiDBLite consensus disorder prediction 132 162 - -
Psa6g1672 479 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 179 412 IPR016266 GO:0003677|GO:0006261|GO:0008622
Psa6g1672 479 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 7 180 IPR016266 GO:0003677|GO:0006261|GO:0008622
Psa6g1672 479 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 435 478 IPR016266 GO:0003677|GO:0006261|GO:0008622
Psa6g1672 479 Pfam DNA polymerase alpha/epsilon subunit B 275 412 IPR007185 GO:0003677|GO:0006260
Psa6g1672 479 PIRSF DNA_pol_epsilon_2 176 230 IPR016266 GO:0003677|GO:0006261|GO:0008622
Psa6g1672 479 PIRSF DNA_pol_epsilon_2 1 183 IPR016266 GO:0003677|GO:0006261|GO:0008622
Psa6g1672 479 PIRSF DNA_pol_epsilon_2 230 479 IPR016266 GO:0003677|GO:0006261|GO:0008622
Psa6g1672 479 Gene3D - 2 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1672 Psa-Chr6 92230107 92235366 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1672 16 420 Core DNA Replication Machinery Family AT5G22110 46.392 2.02e-126 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1672 K02325 - zju:107419650 475.707