Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1670 ATGGAGCAAACCGCGTTTGAATCCATTCAATTCAACGAAGAAATTCAGGGAATCATGGCGCCGGCGTCGGAAACCGCAAGCTCTTTCACCGCACTTCTCGAGCTACCGCCGACGCAGGTCGTCGAGCTTCTCCACTCACCGGAAATCACCGGAAAACCGCCTCGCCATGTCATTAGCCCGAAACCCTATCCTCTAACTTGTAGCACAGATGATTTGATTTTCCCTTCCAACACCGCGTTGGTCGAACGCGCAGCGAGATTCTCCGTTTTCGCCGGTGAGAATTTGTCACACTCGCCGCTGCCGGAGGTGAAAGATGAACTACCGGAAATCGAGGAAGGTGGATGTGTCTCTGATCGTACAGTCGAGAACAAGAATTCCAAACACTCGAAGAGGAAGGAGCGAGAGAAGAAGGTAAAAGCATCTTCCAAGAAAAGCAAAAGCGTCGCCGACGAGAATTCCGGCAACGGCGAGGAACTTCCGTATGTTCATGTTCGAGTTCGTCGAGGTCAAGCCACTGATAGCCATAGTTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGAATGAAACTGTTGCAAGAGCTGGTCCCTGGTTGCAACAAGATATCAGGAACGGCATTGGTTTTGGATAAAATCATCAACCATGTGCAATCTCTACAGCATGAAGTAGAGGTCAGATTTTACATGAATGACACTCTAGGCAATTGTTTAGACAAATGA 723 0.4869 MEQTAFESIQFNEEIQGIMAPASETASSFTALLELPPTQVVELLHSPEITGKPPRHVISPKPYPLTCSTDDLIFPSNTALVERAARFSVFAGENLSHSPLPEVKDELPEIEEGGCVSDRTVENKNSKHSKRKEREKKVKASSKKSKSVADENSGNGEELPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEVRFYMNDTLGNCLDK* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1670 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 170 220 IPR011598 GO:0046983
Psa6g1670 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 232 IPR036638 GO:0046983
Psa6g1670 240 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 226 IPR024097 GO:0006355
Psa6g1670 240 MobiDBLite consensus disorder prediction 101 160 - -
Psa6g1670 240 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 226 - -
Psa6g1670 240 MobiDBLite consensus disorder prediction 101 129 - -
Psa6g1670 240 Gene3D - 167 238 IPR036638 GO:0046983
Psa6g1670 240 Pfam Helix-loop-helix DNA-binding domain 174 221 IPR011598 GO:0046983
Psa6g1670 240 SMART finulus 176 226 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1670 Psa-Chr6 92192703 92198265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1670 2 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 50.988 1.05e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa6g1670 HLH 2.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1670 - - aprc:113872810 294.278