Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa6g1659 | ATGGATCGGGAAGAATATCTGCGGAAGTGTTCCAATATGAAATGCCAAAGAGTTCAGGTGGATGAATCATATGTGCCTTCCCTTCAAGATGATGAAATGGAAATTGAGCATTTGCTTGAAGAACCTAGAAGTGATCATGTTTCATTGGATGGCAGTTTAGCTTCTGATACAGCTTTGAATGACAAGAATGATTTGGAATTTGAGGTCCTTGATGGATTCCTGGACGAGGGATTCCTGGATGATGTTGACATCAATGATCTTGAAGGAACTGATGGTTTCACTGATGTATGTGGAGGGTATTTCTTAGATTTTGATTTTGCCAAAGTTGAGTTACTAGGCCCTGGTGCTTATGAAGACTCACTTTTGGAAAACTCAAATTCGGAAAGTCAATCTCCAGGATTAAGTGGAAGTAGCACTGCTGGTGGGATGTCAGAATCAGCAAAAGCACCCAATAGTATGCAATCTGATTGCAAAATTGAATCTCTAGATGAAACAGTCACCCATGATACACATGGTGTCTTCATGAACAATCCAAGTCAACCATCAAATGTAGGTTGCATGTACAACATTTCACTTGATATACAGCATCTGCATGAGCTGAATAATGGTTATCCTTTAGGTGGCAGTATGTTGTCCTGTAAGACAGAAAATGTTACTGTTGAAAATTGCCAATCTGCTCCACCTAGAGAGAAGAGATTCCGAAAGCCTACTCGGAGGTATATTGAAGAATCTTCAAATTTGAGGTCAAAAGAAAAAGTACCTACTACAGGTGCAAAATACAAACGACGGAGTCTGTCATCATGTAATGAACTTACAAAAATTAAAGGATTGAAGAATATTCCAAGCGAAAAGTCTAGTAATGGTAATAGTGATGTAACGCCTACCGAGTTGCAACGCTGTAAGAAGCTGCCAAAGAAAGAGGAACTTGAGTATGACAATGAGCCTTTTTCTTCGGAGGAGTTTGATGATGAGTTTGAGGAAGAGTTTGAGGATGAACGTTCGGCACCAAAAAGAAGTAGTTCAAAAGATCGAAGAAAGCATCAAAGGATGTGGACAACTGCTGAAGTGACGAAGTTGGTTGATGGCATATCTGAATATGGAGTTGGTCGATGGACTGATATACAGAGGTTTTTATTTTCGGCTTCAGGCTACCGAACTCCCACAGATATCAGGGACAAGTGGCGTAACCTTCTCCGAGCCAGTTCTGCACAGAAATTCATCCAGAAAGAGGGTGAGGAAAATGACAAGATTACCCCGCGGTCCTTACCTGTCAGTTTGGCAAGCCGAGTGCTGGAACTGGCTAAAATTCACCCTTACCCAAAGCGACGAAACTCAAAGAGATCGTCTGATAGCCAAGTCGGATCTTCTGGCACTGCCAGTCAAAGCAGTGGTTCTTCTGTTAGTCTTGGTAGAAGAAATGTTCGTAGGAAGAAGTGTAGTACTTAG | 1446 | 0.4149 | MDREEYLRKCSNMKCQRVQVDESYVPSLQDDEMEIEHLLEEPRSDHVSLDGSLASDTALNDKNDLEFEVLDGFLDEGFLDDVDINDLEGTDGFTDVCGGYFLDFDFAKVELLGPGAYEDSLLENSNSESQSPGLSGSSTAGGMSESAKAPNSMQSDCKIESLDETVTHDTHGVFMNNPSQPSNVGCMYNISLDIQHLHELNNGYPLGGSMLSCKTENVTVENCQSAPPREKRFRKPTRRYIEESSNLRSKEKVPTTGAKYKRRSLSSCNELTKIKGLKNIPSEKSSNGNSDVTPTELQRCKKLPKKEELEYDNEPFSSEEFDDEFEEEFEDERSAPKRSSSKDRRKHQRMWTTAEVTKLVDGISEYGVGRWTDIQRFLFSASGYRTPTDIRDKWRNLLRASSAQKFIQKEGEENDKITPRSLPVSLASRVLELAKIHPYPKRRNSKRSSDSQVGSSGTASQSSGSSVSLGRRNVRRKKCST* | 482 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa6g1659 | 481 | MobiDBLite | consensus disorder prediction | 298 | 312 | - | - | |
| Psa6g1659 | 481 | PANTHER | MYB-LIKE DNA-BINDING DOMAIN CONTAINING PROTEIN, EXPRESSED | 8 | 478 | - | - | |
| Psa6g1659 | 481 | MobiDBLite | consensus disorder prediction | 279 | 296 | - | - | |
| Psa6g1659 | 481 | SUPERFAMILY | Homeodomain-like | 345 | 406 | IPR009057 | - | |
| Psa6g1659 | 481 | MobiDBLite | consensus disorder prediction | 449 | 470 | - | - | |
| Psa6g1659 | 481 | MobiDBLite | consensus disorder prediction | 436 | 481 | - | - | |
| Psa6g1659 | 481 | Pfam | Myb-like DNA-binding domain | 351 | 398 | IPR001005 | - | |
| Psa6g1659 | 481 | PANTHER | TRF-LIKE 8 | 8 | 478 | - | - | |
| Psa6g1659 | 481 | MobiDBLite | consensus disorder prediction | 123 | 156 | - | - | |
| Psa6g1659 | 481 | MobiDBLite | consensus disorder prediction | 226 | 264 | - | - | |
| Psa6g1659 | 481 | MobiDBLite | consensus disorder prediction | 279 | 349 | - | - | |
| Psa6g1659 | 481 | SMART | sant | 347 | 400 | IPR001005 | - | |
| Psa6g1659 | 481 | MobiDBLite | consensus disorder prediction | 227 | 258 | - | - | |
| Psa6g1659 | 481 | MobiDBLite | consensus disorder prediction | 313 | 330 | - | - | |
| Psa6g1659 | 481 | ProSiteProfiles | Myb-like domain profile. | 343 | 398 | IPR001005 | - | |
| Psa6g1659 | 481 | CDD | SANT_TRF | 349 | 399 | - | - | |
| Psa6g1659 | 481 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 343 | 402 | IPR017930 | - | |
| Psa6g1659 | 481 | Gene3D | - | 337 | 450 | - | - |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB-related | Psa6g1659 | Myb_DNA-binding | 3.4e-09 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa6g1659 | - | - | lja:Lj5g3v0659660.2 | 513.842 |
Event-related genes