Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1653 ATGGTTTCTGTTAAATCAAGATCTGTAAGGTTTCATGATGATCTTGAAAAAGAGAAGTTAAAGGAAGTTGAAGAAAATCAAATGGAAATGGCGGCGTATGAGATGAGCAATCAACACAAGCATGTAAGGGATGCGAAAACCAAGCCATCATCAAATGGAAAAGACCTTTCAAGAGTGTTTTCTGAAGATTACGACGCAGAAGAGATTTTAATATTAGATCCTAGAGGACCGAGAGTGAATTTATGGAACAAAATATTCTTAGCAGCGTGTTTGATATCGCTGTTTGTGGATCCGCTTTTCTTTTACTTACCTGTTGCTAAGAAAGAAAAGTGCATTGATATGTCACTTGGTCTTGAAGTTTCACTTACCATAATAAGGTCATTGGTTGATGCATTTTACATTGTTCAGATTTATGTTAAGTTTCAAACTGCTTATATCGCTCCTTCGTCTCGTGTTTCTGGTAGAGGCGAACTCATTATTGACTCCTCAAAGATTGCATCGAATTATCTCAGTAGAGACTTTTGGTTTGATCTTGTTGCCGCACTACCACTTCCTCAGGTACTGATTTGGGCTGTGATTCCAAATCTGAGGGGGTCAGAAATGATTGCGTCGAGGCATATATTGCGCCTCGTGTCCATTTTTCAGTACTTATTGAGGTTGTATCTTATTTATCCTCTATCGTCTGTAATTGTCAAGGCGAATGGAGTCATGATGGAGAAAGCTTGGGCTGGTGCAGCTTATAATTTGACACTCTATATGCTTGCTAGTCATGTTTTAGGATCTACATGGTACCTGTTATCGATTGAAAGACAAGATGAATGCTGGAAGAAAGCTTGTACACTTGAATTTTCACATTGTCGGTATCATTATCTTGACTGTCGAAGCCTTGGTGATCCGAATAGGAATTCATGGCTTAGATCAAGCAATGTCTCTGGTCTATGTGATAATAACAGTGCCTTCTTTCAGTTTGGAATTTTCGCCGATGCTTTGACTTTGGAAATAACTAGCTCGAAATTCTTAAACAAATACTATTACTGTCTTTGGTGGGGATTGAGGAATTTAAGCTCTGCAGGACAGAATCTCTTAACAAGTACACATGTTCCAGAGATAAATTTTGCTGTGATTGTTGCAATTCTTGGGTTGGTGCTTTTTGCACTACTCATAGGCAATATGCAAACATACCTTCAGTCGACCACTATACGGTTGGAGGAGTGGAGAATAAGAAGGACAGATACCGAAAGATGGATGCATCACAGGCAGCTCCCTCGTTACCTGAAGCAAAATGTTCGACGCCATGACCAATTCAGATGGGTCGCTACTCGTGGTGTCGACGAGGAAGCTATTCTTAGAGACCTTCCTGTGGATCTAAGACGTGATATTAAACGCCACCTTTGCCTTAATCTAGTTAGACAAGTACCACTATTTGATCAGATGGATGACAGAATGTTAGATGCAATATGTGAAAGGCTGAAGCCAACTCTATGCAGTGCCGGAACTTGCATAGTTCGCGAATGCGACCCTGTCAACGAAATGCTCTTCATCGTTCGAGGACGCCTAGATTCCTGCACAACCAACGGTGGCAGAACTGGTTTCTTCAACACCTGCAGAATAGGCTCGGGCGACTTCTGTGGTGAAGAGCTTTTACCATGGGCCTTAGACCCTCGTCCAACCGTCGTACTTCCTTCTTCTACTCGAACGGTAAAGGCCATAACCGAAGTTGAAGCTTTCGCACTCATTGCCGAGGATTTAAAATTTGTAGCAGCGCAATTCCGCCGCTTACATAGCAAACAACTGAGACAAACCTTTAGATTCTATTCACATCAGTGGCGGACATGGGCGGCATGTTTTATACAAGCGGCTTGGTTTCGGTATAAAAGAATGAAAGAGATAAACGAAGTTAAGGAAAAGGAGAATCTTATGATGATGGCAAATGTGAACTATTATGGACATGATGATTCTCAATCTTTTTCTGCACCTTTGCAGGCTCCAATGGGATCAAGTTATTCAATGTATTCTGGAAAACTTGTAGGTAGTTTAAGGAAAGGTAGGAGTATGAGATATGGGTCTGAACTTGATCTTCTTGGTGCATTAAGGAAGCCTCTTGAACCAGATTTTAATGATGATGGTGATTAA 2133 0.4107 MVSVKSRSVRFHDDLEKEKLKEVEENQMEMAAYEMSNQHKHVRDAKTKPSSNGKDLSRVFSEDYDAEEILILDPRGPRVNLWNKIFLAACLISLFVDPLFFYLPVAKKEKCIDMSLGLEVSLTIIRSLVDAFYIVQIYVKFQTAYIAPSSRVSGRGELIIDSSKIASNYLSRDFWFDLVAALPLPQVLIWAVIPNLRGSEMIASRHILRLVSIFQYLLRLYLIYPLSSVIVKANGVMMEKAWAGAAYNLTLYMLASHVLGSTWYLLSIERQDECWKKACTLEFSHCRYHYLDCRSLGDPNRNSWLRSSNVSGLCDNNSAFFQFGIFADALTLEITSSKFLNKYYYCLWWGLRNLSSAGQNLLTSTHVPEINFAVIVAILGLVLFALLIGNMQTYLQSTTIRLEEWRIRRTDTERWMHHRQLPRYLKQNVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAICERLKPTLCSAGTCIVRECDPVNEMLFIVRGRLDSCTTNGGRTGFFNTCRIGSGDFCGEELLPWALDPRPTVVLPSSTRTVKAITEVEAFALIAEDLKFVAAQFRRLHSKQLRQTFRFYSHQWRTWAACFIQAAWFRYKRMKEINEVKEKENLMMMANVNYYGHDDSQSFSAPLQAPMGSSYSMYSGKLVGSLRKGRSMRYGSELDLLGALRKPLEPDFNDDGD* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1653 710 SUPERFAMILY cAMP-binding domain-like 404 596 IPR018490 -
Psa6g1653 710 ProSiteProfiles cAMP/cGMP binding motif profile. 474 559 IPR000595 -
Psa6g1653 710 CDD CAP_ED 474 605 IPR000595 -
Psa6g1653 710 SMART cnmp_10 474 605 IPR000595 -
Psa6g1653 710 PANTHER PROTEIN CNGC15A 8 707 - -
Psa6g1653 710 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 8 707 - -
Psa6g1653 710 SUPERFAMILY Voltage-gated potassium channels 73 396 - -
Psa6g1653 710 Gene3D Helix hairpin bin 402 465 - -
Psa6g1653 710 Gene3D - 86 398 - -
Psa6g1653 710 Gene3D Jelly Rolls 472 592 IPR014710 -
Psa6g1653 710 PRINTS EAG/ELK/ERG potassium channel family signature 126 136 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa6g1653 710 PRINTS EAG/ELK/ERG potassium channel family signature 137 146 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa6g1653 710 PRINTS EAG/ELK/ERG potassium channel family signature 254 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa6g1653 710 PRINTS EAG/ELK/ERG potassium channel family signature 343 360 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa6g1653 710 PRINTS EAG/ELK/ERG potassium channel family signature 369 380 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa6g1653 710 PRINTS EAG/ELK/ERG potassium channel family signature 387 396 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa6g1653 710 PRINTS EAG/ELK/ERG potassium channel family signature 437 444 IPR003938 GO:0005249|GO:0006813|GO:0016020
Psa6g1653 710 Pfam Ion transport protein 81 400 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1653 Psa-Chr6 91007912 91011368 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1653 52 708 Ion Channels AT2G28260 64.688 0.0 888
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1653 K05391 - gmx:100815543 1146.34