Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1652 ATGTCTACCTCTGCAACTTCCCTAGCCCTTCCATTTCTCCCAACCAAAACCACTCTCTCTTCTCCACTCTCTTCTCCACTCTCTTCCTTCTCACTCAACACTACTTTCAAACCGTTTTCCTTTGCCTCTCTTCGTTCGACCCTGTCTCTCAGTACCCGTTTTGTTTCCCGTGTTGCTGTTTCGTCGGAGTTTGACCAGGAAGAGGATACTTTTGAGGACGGAGATACTCGTAGTTACTCTGCTAACCAGAGGCTGTTTGTTGGGAACCTTCCTTTCAGCGTTGACAGTGCGCAACTCGCGGAAATTTTTGAAAGTGCGGGGAATGTTGAGATGGTTGAGGTGATTTACGATAAAGCTACCGGGAGAAGCAGGGGATTTGGTTTTGTTACTATGTCTTCCGCTGCTGAAGTTGAGGCTGCTGCTCAACAGTTCAATGGTTATCTAGTGGATGGAAGGGAATTGAGAGTTAATTCTGGACCACCTCCACCACCTCGTGAGAACTCTCGTTTTGGTGACAATCCTCGTTCTGGTGGTGAGAATTCTCGTTTTGGTGACAGTTCTCGTTCTAGAGGTCCTCCAAGAGCTGGTTCAGATAGCGAACACCGTGTTCACGTGGGTAATCTTGCGTGGGGTGTTGACAACGCGTCACTTGAGTCATTGTTCCAAGAACAAGGAAGCGTTATAGAAGCAAAGGTAATCTATGATAGGGACAGTGGAAGATCTAGAGGCTTTGGATTTGTGACTTTCAGTAGTGCTGAAGAGGTCAACAGGGCTATTCAATCCTTAGATGGCGTGGACTTGAAAGGCAGAGCTATACGGGTTGCACCCGCAGGTGCTAGACCAAGTCGTCAATTTTGA 858 0.4755 MSTSATSLALPFLPTKTTLSSPLSSPLSSFSLNTTFKPFSFASLRSTLSLSTRFVSRVAVSSEFDQEEDTFEDGDTRSYSANQRLFVGNLPFSVDSAQLAEIFESAGNVEMVEVIYDKATGRSRGFGFVTMSSAAEVEAAAQQFNGYLVDGRELRVNSGPPPPPRENSRFGDNPRSGGENSRFGDSSRSRGPPRAGSDSEHRVHVGNLAWGVDNASLESLFQEQGSVIEAKVIYDRDSGRSRGFGFVTFSSAEEVNRAIQSLDGVDLKGRAIRVAPAGARPSRQF* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1652 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 201 279 IPR000504 GO:0003723
Psa6g1652 285 SUPERFAMILY RNA-binding domain, RBD 82 187 IPR035979 GO:0003676
Psa6g1652 285 MobiDBLite consensus disorder prediction 173 187 - -
Psa6g1652 285 Gene3D - 168 284 IPR012677 -
Psa6g1652 285 Gene3D - 55 167 IPR012677 -
Psa6g1652 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 161 IPR000504 GO:0003723
Psa6g1652 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 155 IPR000504 GO:0003723
Psa6g1652 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 273 IPR000504 GO:0003723
Psa6g1652 285 SUPERFAMILY RNA-binding domain, RBD 193 283 IPR035979 GO:0003676
Psa6g1652 285 SMART rrm1_1 202 275 IPR000504 GO:0003723
Psa6g1652 285 SMART rrm1_1 84 157 IPR000504 GO:0003723
Psa6g1652 285 MobiDBLite consensus disorder prediction 156 201 - -
Psa6g1652 285 PANTHER 29 KDA RIBONUCLEOPROTEIN, CHLOROPLASTIC 1 281 - -
Psa6g1652 285 PANTHER OS02G0815200 PROTEIN 1 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1652 Psa-Chr6 91004542 91007358 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1652 85 284 Eukaryotic Initiation Factors Gene Family AT4G34110 27.094 1.25e-12 65.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1652 6 91004542 91007358 Psa6g1652 6 91004542 91007358 ECH