Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1648 ATGGTTATCTCATCAACTGTCAAACATCCAGATGAACATAGTGAAAGCATAGACTGTACTTTTGCTTCTAGATACGTGCGTGAAGCAGTTCCAAAGTTCAAGCTGTCAGAGAGTTCTATACCAAAAGATGCAGCATATCAGATAATAAACGATGAGTTGATGTTAGATGGGAAACCAAGGCTTAACTTGGCTTCATTTGTCACTACTTGGATGGAACCTGAGTGTGATAAACTCATCATGGATTCGCTTAACAAGAACTATGTTGATATGGATGAGTATCCTGTCACCACTGAGCTTCAGAATAGGTGTGTGAATATAATAGCACATCTATTCAATGCTCCTATTGGTAAAGAGGAAACAGCAGTAGGTGTTGGGACTGTAGGATCATCAGAAGCAATAATGTTAGCTGGTTTAGCTTTTAAAAGGAAATGGCAGACAAAGAGAAAATCAGAAGGCAAACCTTACGATAAGCCCAACATCGTTACCGGGGCTAATGTGCAGGTTTGTTGGGAAAAATTTGCTAAGTACTTTGAGGTTGAACTAAAGGAAGTGAAACTCTCGGAAGGATACTATGTGATGGATCCATTGAAAGCAGTTGAAATGGTAGATGAGAACACTATCTGTGTTGCAGCCATTTTGGGTTCAACGCTGACCGGAGAGTTTGAGGATGTGAAGCTTCTTAACGAACTTCTTACTGTAAAGAACAAAGAGACGGGATGGGATACGCCGATTCATGTAGATGCTGCGAGCGGTGGTTTTGTTGCTCCGTTTCTCTACCCTGATCTGCTATGGGATTTTCGCTTGCCGTTGGTGAAAAGCATCAATGTTAGCGGTCACAAGTACGGTCTTGTTTATCCCGGTATTGGTTGGGTTGTCTGGAGGAATCAAGATGACTTGCCGGATGATCTTGTTTTTCATATCAATTATCTTGGATCTGATCAGCCAACTTTCACATTGAATTTCTCCAAAGGATCGAGTCAAATCATTGCTCAATACTACCAATTCATTCGACTTGGATTCGAGGGCTACAAAAATGTGATGGAAAATTGCTTGGCGAACACGAGAATTCTGAAAGAAGGAATTGAGAAAACTGGAAAGTTTAAGATTGTGTCCAAGGACGTCGGCGTGCCACTTGTAGCGTTCTCGTTGAAAGACAGTAGCCGGCACACGGTATTCGAGATAGCAGACCATTTGAGAAAATACGGGTGGATAGTTCCGGCCTACACAATGCCTGCGGACGCGCAACACATTGCGGTCCTGCGAGTGGTGATCAGGGAGGATTTTAGCCGCAGCTTGGCTGAGAGACTTGTTTCTGATATTTGCAAAGTTGTGACTCTCTTGGAGACACTTCCAAGTACCATCTCCTCGAAAAGTGCTCATGTCGCGGTTATCGCGAGTGAGACGAGCGAGGAGGTTAAGAAAGATATTACAGAGACTCAAACTGAGATTGCAAGTTATTGGAAGAAGCTTGCTACAGGAAAGAGAGTTGGAACATGCTAG 1500 0.4307 MVISSTVKHPDEHSESIDCTFASRYVREAVPKFKLSESSIPKDAAYQIINDELMLDGKPRLNLASFVTTWMEPECDKLIMDSLNKNYVDMDEYPVTTELQNRCVNIIAHLFNAPIGKEETAVGVGTVGSSEAIMLAGLAFKRKWQTKRKSEGKPYDKPNIVTGANVQVCWEKFAKYFEVELKEVKLSEGYYVMDPLKAVEMVDENTICVAAILGSTLTGEFEDVKLLNELLTVKNKETGWDTPIHVDAASGGFVAPFLYPDLLWDFRLPLVKSINVSGHKYGLVYPGIGWVVWRNQDDLPDDLVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCLANTRILKEGIEKTGKFKIVSKDVGVPLVAFSLKDSSRHTVFEIADHLRKYGWIVPAYTMPADAQHIAVLRVVIREDFSRSLAERLVSDICKVVTLLETLPSTISSKSAHVAVIASETSEEVKKDITETQTEIASYWKKLATGKRVGTC* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1648 499 Gene3D - 1 68 - -
Psa6g1648 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 IPR010107 GO:0004351|GO:0006536|GO:0030170
Psa6g1648 499 CDD DOPA_deC_like 62 440 - -
Psa6g1648 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 - -
Psa6g1648 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 42 384 IPR002129 GO:0016830|GO:0019752|GO:0030170
Psa6g1648 499 Gene3D - 364 451 - -
Psa6g1648 499 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 20 447 IPR010107 GO:0004351|GO:0006536|GO:0030170
Psa6g1648 499 SUPERFAMILY PLP-dependent transferases 8 447 IPR015424 -
Psa6g1648 499 Gene3D - 69 363 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1648 Psa-Chr6 90240383 90243083 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1648 1 495 Calmodulin-binding Proteins AT2G02010 76.970 0.0 803
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1648 K01580 - gmx:100796475 876.7