Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1631 ATGAATACATTTATGGATTCAAGAGATAATAACTCATCAAAAGAAGATGAAAGGTGTTTAGATCCTCAGCTATGGCATGCTTGTGCAGGTGGAATGGTTCAGATGCCGGCGGTGAACAGTAAAGTGTATTACTTTCCTCAAGGTCATGGTGAACATGCATGTGGACCTGTTAATTTCATGAATTGTCCAAAGGTGGAGCCTTTGATTCCATGCAAAGTTTTTTCTGTTAAGTTCTTGGCTGATCCTGAAACTGATGAGGTTTATGCTAAGCTGAAGCTTGTTCCTTTGAGTGGAAATGGAAATGGAAATGGAAATGGAAATGATGGTGTAGATTATAACAATGATGTTGTTGGTGTTGAAAATCAAGATAAGCCTGCTTCGTTTGCAAAGACATTGACGCAATCTGATGCGAATAACGGTGGAGGTTTTTCTGTTCCTAGGTATTGTGCGGAGACGATATTCCCTCGGTTGGATTACGCGGCGGATCCTCCTCTTCAGAACATTTTGGCTAAAGATGTTCACGGCGAAACATGGAAGTTTAGGCATATTTATAGGGGGACGCCGAGGAGGCATCTTTTGACTACAGGTTGGAGTACTTTTGTTAATCACAAGAAGCTTCTTGCTGGTGATTCAATTGTGTTTTTGAGGGCGGAAAACGGTGATCTTTGTGTCGGGATTCGACGGGCGAAGAAAGGTATCGGTGGCGGACATGAGGATCCTTCAGGGTGGAATCCTGTAGGAGAAAAGTTTCCTCTGCCTTGGTTTGCACAGAACGAGAATCAAATGATGAGAAACGTTAACAATAACAACAACAATGGTTTTAACTCGAGCGCGAATGTGATGGGGAGGGAAAAAGTTAGGCCAGAATCGGTCCTTGAAGCGGTAACTTTAGCTGCAAATAAGCAACCGTTTGAGGTTGTTTACTACCCTCGCGCAAGTACACCGGAGTTTTGTGTTAAGGCGCATTTAGTAGAGGCGGCAATGCATATTCGATGGTGTTCTGGAATAAGATTCAAGATGCCATTTGAAACCGAGGATTCGTCTCGAATAAGTTGGTTTATGGGAATTGTATCTGGAGTTCAGTTTGTTGATCCCCTTCTCTGGCCTAATTCACCTTGGAGACTTCTTCAGGTTAAATGGGATGAACCAGATTTACTACAAAATGTGAGAAGGGTGAGTCCATGGTTGGTTGAATTAGTAGCAAACGTTCCGTCGATGAACCTTTCACCTTTCTCGCAACCAAGAAAGAAATTGAGAATGTCGCCAAACTCAGATTTCCCCCTCGACGGCCAAATTCCGGTGCCAACTTTTCCTAGTAACCTTCTAGGTACGAGCAACCTATTTCGTTGTCTACCCGAAAATACTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTACGGTCTTCCAATATCGGATTTCCACCTCAGTAAAGTTCAGTCAGGTCTATTTCCGGCCGGTTTCGTGCCTTTTGATCATGCTGCTAAACTACCTAATGTCTCTGATAACCTAATGATGCAAAAATCTAGCATGAGTGAGAATGTCTCTTGCTTACTATCAATGGCAAGTTCTACTCAGTCTTCGAGGAACTTCGACGACGAGAAGAAACCTCAGCTTGTGCTTTTTGGCCAAAAAATTCTAACCGAGCAACAGATCTCTAATGACCGTTCATCTGATGGAAATGCCGATAAAGTAACGGATTTTTCTGATGGTTCGGGAACTCCTCTTCATCAACAACACTTACGAAAACGCTACTCTTGTGAGACCGAGGCGAGTTTGGAGCGTGCTGATCACTGTAAAGTTTTTCTCGAATCAGAAGATGTCGGTCGAACAATTGATCTATCTTTACTTGAATCTTATGATCAACTGTACAGAAAACTTGCAGACATGTTTGGCATAGAAAAATATGAAAAGGTAAGCCGCGTGCTCTACCGGGATATATCAGGAGCAGTCAAACACATCGGAGATGAACCATTCAGTAACTTCACAAGAACAGCAAGGAGATTGACAATTCTAATGGACTCAAACAAATAA 2034 0.4292 MNTFMDSRDNNSSKEDERCLDPQLWHACAGGMVQMPAVNSKVYYFPQGHGEHACGPVNFMNCPKVEPLIPCKVFSVKFLADPETDEVYAKLKLVPLSGNGNGNGNGNDGVDYNNDVVGVENQDKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYAADPPLQNILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLLAGDSIVFLRAENGDLCVGIRRAKKGIGGGHEDPSGWNPVGEKFPLPWFAQNENQMMRNVNNNNNNGFNSSANVMGREKVRPESVLEAVTLAANKQPFEVVYYPRASTPEFCVKAHLVEAAMHIRWCSGIRFKMPFETEDSSRISWFMGIVSGVQFVDPLLWPNSPWRLLQVKWDEPDLLQNVRRVSPWLVELVANVPSMNLSPFSQPRKKLRMSPNSDFPLDGQIPVPTFPSNLLGTSNLFRCLPENTPAGMQGARHAHYGLPISDFHLSKVQSGLFPAGFVPFDHAAKLPNVSDNLMMQKSSMSENVSCLLSMASSTQSSRNFDDEKKPQLVLFGQKILTEQQISNDRSSDGNADKVTDFSDGSGTPLHQQHLRKRYSCETEASLERADHCKVFLESEDVGRTIDLSLLESYDQLYRKLADMFGIEKYEKVSRVLYRDISGAVKHIGDEPFSNFTRTARRLTILMDSNK* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1631 677 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Psa6g1631 677 SUPERFAMILY DNA-binding pseudobarrel domain 118 236 IPR015300 -
Psa6g1631 677 CDD B3_DNA 127 228 IPR003340 GO:0003677
Psa6g1631 677 PANTHER AUXIN RESPONSE FACTOR 9 673 - -
Psa6g1631 677 Gene3D - 331 405 - -
Psa6g1631 677 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 673 IPR044835 GO:0003677|GO:0006355|GO:0009725
Psa6g1631 677 Pfam Auxin response factor 294 377 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Psa6g1631 677 SMART B3_2 128 230 IPR003340 GO:0003677
Psa6g1631 677 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Psa6g1631 677 Gene3D - 592 677 - -
Psa6g1631 677 Gene3D - 126 230 IPR015300 -
Psa6g1631 677 ProSiteProfiles PB1 domain profile. 596 676 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1631 Psa-Chr6 88612673 88616721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1631 17 674 B3 DNA Binding Superfamily AT4G30080 55.539 0.0 682
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Psa6g1631 B3 3.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1631 - - gmx:100796522 971.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1631 6 88612673 88616721 Psa6g4184 6 368426146 368429232 ECH
Psa6g1631 6 88612673 88616721 Psa6g1631 6 88612673 88616721 ECH
Psa6g1631 6 88612673 88616721 Psa5g6427 5 545184004 545187548 ECH