Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1630 ATGGCATCATCTGAAATAACTGAGGAACTCACAAGTGGACAAAGAACAACTCAAAACCTTAGCATAGAGACACCATTAAGAACTCAAGAAGAAGCAAAAGAAGATTTCTTGAGAATAAACATACCTCTAACTCCATCACCAAGAAGAGTGCTATTTTCTCCTTGTGCAAGTCCTGGTTTCATTCCAAACAATGAATCACCTGGTTCTTCTAGTTCTAGAAACAGGCCAACTCTTAAAAAATCGCTTATACCGAAACTCAGTTTCAAGTTTAAGAACACAGCTTCTGAGATTGAAAAAGCTGCTTTTCTTGCACTTGAAGGTTCGTCCACGGTATCGTCGAAAAAGCCTTTTCTTTCTAGGACGTTGTCTCGTATCAAATTGAAAGGGAGGAAAACATCTTCCTTGCCTGTATCGCCGGTTCCTCGTTCAAATCCCGCGTCTGTACATGGCGGGAAAGGTTATCCCGCAATGGCTAGTGAGAAAGAACTGCGGTTACCAATTCATCGTTCGCGATCTGTTCCTGCATTTACCGGAGAAGATACTTCTGTTGGTGGCAGGTTTCGAATTTTTCGGATGATACCACCATCGAACGAGAAAATTTCCTCGGCAACATTTGCAGCATCTCCAACTGGTGAAAATGTTGAAACTGAGGATGGAGGCGAAGATATTCCAGAAGAAGAAGCTGTTTGTAGAATTTGTATGGTTGAATTGGGAGAAGGTGCGGAGAATTTTAAATTGGAGTGTAGCTGCAAAGGCGAGCTTTCACTAGCACACAAAGAATGTGCGGTTAAATGGTTCGGAATTAAAGGTAATAGGACATGTGATGTGTGCAAACAAGAAGTTCAGAACTTACCTGTCACTCTCTTACGACTTCATAGCGCTAACTTGCAATCGAACAGAGGTCACCTAGACGAATCGTCTCAATACAGGGTTTGGCAGGACGCCCCGATTCTTGTCATTGTCAACATGCTAGCTTACTTTTGTTTTCTTGAGCAGCTTCTTGTTTCGAGTATGGGATCTGGTGCTATCGCCATGTCCCTTCCGTTTTCTTGTATACTTGGTCTTCTTGCAAGCATGACAGCTACGACCATGGTGAGGAGAAATCGTGTTTGGATTTACGGAACCATCCAGTTTTGTTTAGTGGTTCTTGCTGGACATCTTCTTTACTCAGTGGCTCATATGGAAGCTGTTTTGGCGATCCTACTAGCTACATTTGCTGGGTTTGGAACTGTAATGTGCGGAACATCTATTCTTATGGAGATATTGAAATGGAGGACAAGATGGCTTGCTCGGTGGAATCAACAGAATGGCGAGTCCGCGGATGCGGTTCCGTCTGATCAATCCTCTGCAACCACTCATCCAGCTCAAAGTGATTCTCAAAATGCTGAGAGTAATGTGGGAAATTCTCCTAGGCAAATGAGCTGA 1425 0.433 MASSEITEELTSGQRTTQNLSIETPLRTQEEAKEDFLRINIPLTPSPRRVLFSPCASPGFIPNNESPGSSSSRNRPTLKKSLIPKLSFKFKNTASEIEKAAFLALEGSSTVSSKKPFLSRTLSRIKLKGRKTSSLPVSPVPRSNPASVHGGKGYPAMASEKELRLPIHRSRSVPAFTGEDTSVGGRFRIFRMIPPSNEKISSATFAASPTGENVETEDGGEDIPEEEAVCRICMVELGEGAENFKLECSCKGELSLAHKECAVKWFGIKGNRTCDVCKQEVQNLPVTLLRLHSANLQSNRGHLDESSQYRVWQDAPILVIVNMLAYFCFLEQLLVSSMGSGAIAMSLPFSCILGLLASMTATTMVRRNRVWIYGTIQFCLVVLAGHLLYSVAHMEAVLAILLATFAGFGTVMCGTSILMEILKWRTRWLARWNQQNGESADAVPSDQSSATTHPAQSDSQNAESNVGNSPRQMS* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1630 474 CDD RING_CH-C4HC3_MARCH 230 278 - -
Psa6g1630 474 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 285 IPR013083 -
Psa6g1630 474 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 2 469 - -
Psa6g1630 474 SUPERFAMILY RING/U-box 226 281 - -
Psa6g1630 474 MobiDBLite consensus disorder prediction 1 26 - -
Psa6g1630 474 ProSiteProfiles Zinc finger RING-CH-type profile. 222 284 IPR011016 GO:0008270
Psa6g1630 474 Pfam RING-variant domain 230 277 IPR011016 GO:0008270
Psa6g1630 474 MobiDBLite consensus disorder prediction 437 474 - -
Psa6g1630 474 SMART ringv_2 229 278 IPR011016 GO:0008270
Psa6g1630 474 MobiDBLite consensus disorder prediction 1 33 - -
Psa6g1630 474 PANTHER OS02G0165000 PROTEIN 2 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1630 Psa-Chr6 88546690 88548850 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1630 224 284 C3H Transcription Factor Family AT2G37950 43.750 6.39e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1630 - - gmx:100787963 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1630 6 88546690 88548850 Psa6g1630 6 88546690 88548850 ECH