Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1612 ATGCAAATCTTTGTCAAAACCCTCACCGGAAAAACCATAACCCTAGAGGTTGAATCCTCCGATACCATCGACAACGTCAAAGCCAAAATCCAAGACAAAGAGGGAATTCCACCAGACCAGCAGCGTCTCATCTTCGCCGGAAAACAATTAGAAGACGGCCGAACCCTAGCCGACTACAACATACAGAAAGAATCCACTCTCCACCTCGTTCTCCGTCTCCGCGGTGGCATGCAAATCTTCGTCAAAACCCTAACCGGCAAAACCATCACACTCGAGGTTGAATCCTCCGACACAATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCGGATCAGCAGCGATTGATCTTTGCCGGAAAGCAACTGGAGGACGGGAGAACTCTTGCGGATTATAATATCCAGAAAGAGTCTACTCTCCATCTGGTTCTTCGTCTGCGCGGTGGAATGCAGATTTTTGTGAAGACTTTAACGGGGAAGACGATTACTTTGGAGGTGGAGAGTTCGGATACAATTGATAATGTGAAAGCGAAGATTCAGGATAAGGAAGGGATTCCACCGGATCAACAGCGTCTTATCTTTGCTGGGAAGCAGCTTGAGGATGGACGCACTTTAGCTGATTATAATATTCAGAAGGAATCTACCCTTCACCTTGTTCTCAGACTCCGTGGTGGCGCTCATTGTTGGATTACCAGTGTGCGTGGGTAG 717 0.4798 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAHCWITSVRG* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1612 238 SMART ubq_7 1 72 IPR000626 GO:0005515
Psa6g1612 238 SMART ubq_7 153 224 IPR000626 GO:0005515
Psa6g1612 238 SMART ubq_7 77 148 IPR000626 GO:0005515
Psa6g1612 238 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Psa6g1612 238 Gene3D - 153 232 - -
Psa6g1612 238 Gene3D - 78 152 - -
Psa6g1612 238 Gene3D - 1 77 - -
Psa6g1612 238 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Psa6g1612 238 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Psa6g1612 238 Coils Coil 235 238 - -
Psa6g1612 238 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Psa6g1612 238 CDD Ubl_ubiquitin 77 152 - -
Psa6g1612 238 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Psa6g1612 238 CDD Ubl_ubiquitin 1 76 - -
Psa6g1612 238 PRINTS Ubiquitin signature 11 31 IPR019956 -
Psa6g1612 238 PRINTS Ubiquitin signature 32 52 IPR019956 -
Psa6g1612 238 PRINTS Ubiquitin signature 53 74 IPR019956 -
Psa6g1612 238 CDD Ubl_ubiquitin 153 228 - -
Psa6g1612 238 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Psa6g1612 238 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515
Psa6g1612 238 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Psa6g1612 238 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515
Psa6g1612 238 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Psa6g1612 238 SUPERFAMILY Ubiquitin-like 152 229 IPR029071 -
Psa6g1612 238 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Psa6g1612 238 PANTHER - 72 233 - -
Psa6g1612 238 PANTHER - 1 159 - -
Psa6g1612 238 PANTHER UBIQUITIN 1 159 - -
Psa6g1612 238 PANTHER UBIQUITIN 72 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1612 Psa-Chr6 87880102 87881890 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1612 1 78 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 97.436 1.05e-48 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1612 K08770 - cmax:111480554 446.047