Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1593 ATGGCTATGGAAGAAACAACATCAACCATCATGGCAGCACTTTCATCTCTCCCTTCTTACCACCTCACAAATCTCACCAACGCCATTCTCTCATCCACCCGCCGCCACCACCACCGTCTCACCTTCCTCCTCTCTTCCCCAACTCTCTTTTCCTTAACGCTTCGTCACCTCCACACACTCTCTCTCCCCCAAAAAACTCTACTCATTTCACGACACCTTCTTTCGTCTCTTCACCTTCTCACCCAATCCAAACTCTCCACGTCACCACTTCCACCTCCTGCTTCAACCTCCATGAGAGATCGTGAAATCGACGCGGTCTTGCTACTTCTCTTGTTATGCGAAACACATAAACACAATCCGGAAGCTCTAAACGCGCCGTGTTCTGATTGGAGATTGAATTTGAGCAAACTCTTCTCCGATACATTGTTGACGTTTTCTTACTCTTCTGCGCCGCCGCTCGGGGCGTGTTCGGGATCTGTTTTGATTCCGTTTATCGAAACAGTGAGTCGGTGTTGGAGATTGGTGGATGTTTTAGCCTGCGACGGTGGTGGTGAAAGTGGAAAGGGAGTGAATGAAGTGGCGGCTTCGGCGGCAACGGTGGTTTCTTTGCCGGCGGTAGGAGTGAGTGTTGGCGGGAGAGAGTGTGTGATATGTAAAGATGAGATGCGAGTGGGGAGAGACGTGTGTGAGTTGCCTTGTCAGCACTTGTTCCATTGGATGTGTATTTTGCCTTGGCTGGGAAAGAGGAACACGTGTCCTTGCTGCAGGTTTCGGTTACCGTCCGATGATGTATTTGGAGAGATCCAACGGCTGTGGGAAGTCTTGGTTAAAATTGGTTCTAGATGA 846 0.4988 MAMEETTSTIMAALSSLPSYHLTNLTNAILSSTRRHHHRLTFLLSSPTLFSLTLRHLHTLSLPQKTLLISRHLLSSLHLLTQSKLSTSPLPPPASTSMRDREIDAVLLLLLLCETHKHNPEALNAPCSDWRLNLSKLFSDTLLTFSYSSAPPLGACSGSVLIPFIETVSRCWRLVDVLACDGGGESGKGVNEVAASAATVVSLPAVGVSVGGRECVICKDEMRVGRDVCELPCQHLFHWMCILPWLGKRNTCPCCRFRLPSDDVFGEIQRLWEVLVKIGSR* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1593 281 SMART ring_2 215 255 IPR001841 -
Psa6g1593 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 267 IPR013083 -
Psa6g1593 281 Pfam Ring finger domain 214 256 IPR001841 -
Psa6g1593 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SGR9, AMYLOPLASTIC 2 279 - -
Psa6g1593 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 279 - -
Psa6g1593 281 ProSiteProfiles Zinc finger RING-type profile. 215 256 IPR001841 -
Psa6g1593 281 SUPERFAMILY RING/U-box 212 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1593 Psa-Chr6 86301945 86304142 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1593 4 277 C3H Transcription Factor Family AT5G02750 48.936 3.10e-81 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1593 - - pvu:PHAVU_007G161400g 345.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1593 6 86301945 86304142 Psa6g1593 6 86301945 86304142 ECH