Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1588 ATGAAACGACAAAGAGACGAAAGAGTAGAGAACATAGATTTAGCAAATTGTCTAATTCTACTCTCTCATCCCAAACAAACCAAACCAAAGAAACATTTTGGTCGTGTTGAATTTGAATGCACCACATGCAACCGTAAGTTCTCTTCATTTCAAGCCCTAGGTGGCCATAGGGCTAGTCACAATAAACCCAAACTAGATGCCACAAAACTCAAACTACAGGTACAAAATTTGAGTTTATTGAATAAGTCCAAAATGCATGCTTGCTATATTTGCGGTAAAGAATTCTCTTTAGGCCAGGCTTTGGGAGGACATATGAGAAGGCACAGAGTTGGTGTCAATGAAGACTTTTCTTTGATGAAGGAAAATAAGATTGTTGGAGAAGTTCCTATATTGAAAAGATCGAATAGTAAGAGGGTTGTGTGTTTGGACTTGAATTTAACACCTTTGCAGAATGACCTGAAGTTATTGTTTGGAAATATGGCACCTAAAGTTGATTCTTTTGTCTGA 507 0.3728 MKRQRDERVENIDLANCLILLSHPKQTKPKKHFGRVEFECTTCNRKFSSFQALGGHRASHNKPKLDATKLKLQVQNLSLLNKSKMHACYICGKEFSLGQALGGHMRRHRVGVNEDFSLMKENKIVGEVPILKRSNSKRVVCLDLNLTPLQNDLKLLFGNMAPKVDSFV* 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1588 168 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 163 - -
Psa6g1588 168 SMART c2h2final6 38 60 IPR013087 -
Psa6g1588 168 SMART c2h2final6 86 108 IPR013087 -
Psa6g1588 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 108 IPR013087 -
Psa6g1588 168 PANTHER ZINC FINGER PROTEIN ZAT5 1 163 - -
Psa6g1588 168 SUPERFAMILY beta-beta-alpha zinc fingers 38 108 IPR036236 -
Psa6g1588 168 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Psa6g1588 168 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Psa6g1588 168 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Psa6g1588 168 Gene3D Classic Zinc Finger 35 108 - -
Psa6g1588 168 Pfam C2H2-type zinc finger 86 109 - -
Psa6g1588 168 Pfam C2H2-type zinc finger 38 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1588 Psa-Chr6 85920262 85921542 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1588 1 165 C2H2 Transcription Factor Family AT2G37430 47.778 4.96e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g1588 zf-C2H2_6 2.5e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1588 - - aprc:113870747 234.572