Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1587 ATGCAAAACACCTATTTGGATCCCCACGTTTTCCTTTTTGACTTTACCTCTCTTATAAATACAAGCTATTTAGTGTTCTTCATTAAACAAACTGTCATGATGAAGAGACAGAGAGAAAATGTAGTAGAAAAAGAGAGCATGGATTTAGCAACAAGTCTGATGCTACTCTCGTCTCATCGTACTCATCAACAACAAAACATCAAAACATATACTCAAGTTGAGTTTGAGTGCAAAACATGCAACCGCAAATTCTCATCTTTTCAAGCACTTGGTGGTCACAGGACAAGTCACAAGAAACCCAAACTTGAAGGAGATGAAACACTCAAAGGAAATAATCATACAAATAAGGAACCAAAAGAGCACAAGTGTTCAATTTGTGGACAAGAATTCAAATTGGGTCAAGCTTTGGGTGGACATATGAGAAGACATAGAACTAATAATGAAGGGGTTTCTTCATCTTCTATGAACTATCAAGTGATATCAAAATCTTCTCCAGTTTTGAAACGATCAAATAGCAAAAGGGTTATGTGTTTGGTATTGGACTTAAATTTAACACCTTTAGAAAATGACTTGAAGTTGTTGTTTGGAAATAAGGCACCTAAAGTAGATCTTTCTATGTTTTGA 624 0.351 MQNTYLDPHVFLFDFTSLINTSYLVFFIKQTVMMKRQRENVVEKESMDLATSLMLLSSHRTHQQQNIKTYTQVEFECKTCNRKFSSFQALGGHRTSHKKPKLEGDETLKGNNHTNKEPKEHKCSICGQEFKLGQALGGHMRRHRTNNEGVSSSSMNYQVISKSSPVLKRSNSKRVMCLVLDLNLTPLENDLKLLFGNKAPKVDLSMF* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1587 207 Pfam C2H2-type zinc finger 121 144 - -
Psa6g1587 207 Pfam C2H2-type zinc finger 75 100 - -
Psa6g1587 207 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 34 201 - -
Psa6g1587 207 PANTHER ZINC FINGER PROTEIN ZAT5 34 201 - -
Psa6g1587 207 MobiDBLite consensus disorder prediction 91 120 - -
Psa6g1587 207 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Psa6g1587 207 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 148 IPR013087 -
Psa6g1587 207 ProSitePatterns Zinc finger C2H2 type domain signature. 123 143 IPR013087 -
Psa6g1587 207 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Psa6g1587 207 SUPERFAMILY beta-beta-alpha zinc fingers 75 143 IPR036236 -
Psa6g1587 207 SMART c2h2final6 75 97 IPR013087 -
Psa6g1587 207 SMART c2h2final6 121 143 IPR013087 -
Psa6g1587 207 Gene3D Classic Zinc Finger 72 143 - -
Psa6g1587 207 MobiDBLite consensus disorder prediction 96 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1587 Psa-Chr6 85889471 85890640 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1587 34 204 C2H2 Transcription Factor Family AT3G53600 51.111 3.56e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g1587 zf-C2H2_6 7.8e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1587 - - lja:Lj5g3v0614980.1 220.32