Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1586 ATGATGAAGAGACAGAGAGAAAATGTAGTAGAAAAAGAGAGCATGGATTTAGCAACAAATCTAATGTTACTCTCATCTCATCGTACCCATCAACAGCAAAACAACAAAACATATTCTCAAATGGAGTTTGAGTGCAAAACATGCAACCGCAAATTCTCATCTTTTCAAGCACTTGGTGGTCACAGGACAAGTCACAAGAAACTCAAACTTGAAGGAGATGAAACACTCAAAGGGAATATTCATATGACTAAGGAACCAAAAGTGCACAAGTGTTCAATTTGTGGACAAGAGTTCAAATTGGGTCAAGCTTTGGGTGGACACATGAGAAGACATAGAATTAATAATGAAGAGGTTTCTTCATCTTCTATGAATTATCATCAAGTGATAGCAAAATCTTCTCCTGTTTTGAAAAGATCGAATAGTAAAAGGGTTATGTGTTTGGAGCTGGACTTGAATTTGACACCTTTAGAAAATGATTTGAAGTTCTTGTTTGGAAATAAGGCACCTCAAGTAGATCTCTCTTTGTTTTGA 531 0.3597 MMKRQRENVVEKESMDLATNLMLLSSHRTHQQQNNKTYSQMEFECKTCNRKFSSFQALGGHRTSHKKLKLEGDETLKGNIHMTKEPKVHKCSICGQEFKLGQALGGHMRRHRINNEEVSSSSMNYHQVIAKSSPVLKRSNSKRVMCLELDLNLTPLENDLKFLFGNKAPQVDLSLF* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1586 176 SMART c2h2final6 43 65 IPR013087 -
Psa6g1586 176 SMART c2h2final6 89 111 IPR013087 -
Psa6g1586 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Psa6g1586 176 ProSitePatterns Zinc finger C2H2 type domain signature. 45 65 IPR013087 -
Psa6g1586 176 SUPERFAMILY beta-beta-alpha zinc fingers 43 111 IPR036236 -
Psa6g1586 176 ProSiteProfiles Zinc finger C2H2 type domain profile. 43 70 IPR013087 -
Psa6g1586 176 Gene3D Classic Zinc Finger 41 111 - -
Psa6g1586 176 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 2 170 - -
Psa6g1586 176 Pfam C2H2-type zinc finger 88 112 - -
Psa6g1586 176 Pfam C2H2-type zinc finger 43 67 - -
Psa6g1586 176 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Psa6g1586 176 PANTHER ZINC FINGER PROTEIN ZAT5 2 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1586 Psa-Chr6 85848230 85849583 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1586 2 173 C2H2 Transcription Factor Family AT2G37430 47.312 6.99e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g1586 zf-C2H2_6 1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1586 - - lja:Lj5g3v0614980.1 218.009