Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1571 ATGGGAGAAGAAGCTGTTTGTTTGCAAGCATTGGAAGATGGAAGGACAGAAAATAATGAGGTTCCGAAGGCGGAACTGAAACGTGACTATCACCAATGTGTTGCTGATACTGAACCACCCAATGTTTCTCCGAATAAAAAACAAGCAAAAGAAGTTTCTAATGATGAAGTGCGTTCTGAAGTTTCGAATCCCAATGTTTCTGCAACAGAACACGCACTAACCTTTCATGATATCAGTAGCCAACCCACAGAAACGGAAAACGTCAACCATGCAGAATGCGGTGAACTGACGTCTACTTGTTTGGAGAATTCTAGTTCTCATGACACTCTTAGCGATGAGGCCATTGATAGGAATAACGATAATAACAATAATACTTCTCTGTATGATAAAAGCACTAGTAGTAAGGATGCAATGATGTCCCGTGTTGTGATGGAAATCCCTAAGCATGTTAGTTCAACCGGTATTAGAAAAATTACTTTTAAGTTCAGTAAAAAGAAGGAGGACTATGATGATCAAACACCTGCTCGCTATACTGATGGCCATGGCAATGGCTATCACGGGGATGATGAATACTTGGCAAAGGATGATTATAATAGTGGCTTGTTAGAAAGCTCATATGGCATGCAATATGTTCCTGATGGATATTTGGAATCATATTCTGGCAATATGGAATTGAAAATGTCAAAGAAAGTAGTCCCTAACTGCTTCCCCACAAATGTCAAAAAGCTCTTATCAACTGGTATCCTTGATGGAGCTGCAGTGAAATATATTTACAACCCTGGAAAGGTTGAGCTGGAAGGGATTATCGGTAGCGGTGGATATTTGTGTGGCTGTTCAATGTGCAGTTACTCTAGAGTGCTCAGTGCCTATGAGTTCGAGCAGCATGCTGGTGCTAAGACTAGACATCCAAATAATCACATATTCCTAGAAAATGGAAAACCAATTTATAGCATTATACATGAAATAAAAACTGCTCCAAACAGCATGCCAGATGAGATTATAAAGAATGTGGCCGGTGCATCTATCAACGAGGAAACCTTCCAGGTTTGGAAAGAAAGTCTTCTAGAAAGCAACAGGAAGGTTCCTGCTCATAAAAATTACATTACAAAGTTTACTGGCATGCCTCACACAAACAACAGTCAATCTATAGAAAGTGAAAGCCATTTCTTATCTTCGCGTGTACGGAATCATTTGGAACAACAAGTGTATGTGAACCAGACATCTGATGAGTGGAAACGTGTGGTGAAGAAGCCAAGCACCTACACTTACACCTCAGGTATACTGCAGAAGAGAAGTACTGATGGTTGCACTAAGAAAAGGGACAACGATTTGCACAGATTACTTTTTCTACCTAATGGCCTACCAGATGGTGCTGAGTTGGCTTACTATGTCAAAGGACAGAGATTACTTGGAGGTTACAAACAAGGAAGTGGTATAGTCTGCAGTTGTTGTGATATAGAGATAAGCCCTTCACAGTTTGAAGCCCATGCTGGAATGGCAGCTAGACGTCAACCTTATCGCCACATATATACTTCCAACGGATTAACGCTTCATGACATAGCTCTCTCTTTGGCAAATGGTCAAAACCTTACTACGGGAGATAGTGATGACATGTGTGCAGTATGCGGAGATGGAGGAGATTTGATTCTTTGCAATGGATGTCCTAGGGCCTTTCATGCAGCCTGCTTGGGCTTACACACTGTACCCGCTAGTGGTTGGCATTGTCTAAATTGTAAAGATAATACTGATGATGAAAGAGGTGTGAGACCCATCATGATACGGTTGACACGAGTTGATAAAGAACCAGAATATGAAATGGGTGGATGTGTTGTTTGCAGGGAAAATGATTTCAGTGTTGATAAGTTTGATGACCGAACAGTAATAATTTGTGATCAGTGTGAGAAGGAGTATCATGTTGGTTGCTTGCGGAACATTGGGCTATGTGAGTTGGAAGAGCTTCCCAAAGAAAAGTGGTTTTGTTGTGACGACTGCAGTCGAATATATGTGGCTCTTCAGACTTCAGTTTCTGCTGGAGCAGATACTATACCCACTCGCTTGTCTGAACTAATAATCAGGAAGCACAAGGAGAGGGGGTTGTGTACGTATGGATTCATGAATGATATTCAGTGGAGAATTTTAAGTGGAAAAAGTCGTTATCCAGAGCATTTACCGTTGCTTTCACGAGCTGCTGCAATTTTTCGAGAGTGTTTTGATCCCATTGTCGCAATATCTGGCCGTGACCTGATTCCTGTTATGGTCTATGGGAGAAATATTTCTGGCCAAGAATTCGGGGGAATGTATTGCATTGTTTTAATTGTGAATTCTATTGTAGTATCTGCCGGGCTTCTCAGGATTTTTGGCCGCAATATTGCTGAGCTTCCCCTGGTAGCTACAAGTAGAGAGTATCAAGGAAAAGGTTATTTTCAAGTGCTGTTCTCTTGCATAGAGAGGTTGTTGTCTTCTCTAAATGTAGAAAAGCTGGTTCTCCCTGCTGCAGGGGATGCAGAGTCAATTTGGACTAAAAAATTAGGCTTTCACAAGATGAGTGAAGATCAGTTATCCAAATATCTTAGAGAGGTGCAGCTCACCCTCTTCAACAAAACTTCAGTGCTGGAGAAGACTGTGCAGCTTGCGACAGAATGA 2643 0.4143 MGEEAVCLQALEDGRTENNEVPKAELKRDYHQCVADTEPPNVSPNKKQAKEVSNDEVRSEVSNPNVSATEHALTFHDISSQPTETENVNHAECGELTSTCLENSSSHDTLSDEAIDRNNDNNNNTSLYDKSTSSKDAMMSRVVMEIPKHVSSTGIRKITFKFSKKKEDYDDQTPARYTDGHGNGYHGDDEYLAKDDYNSGLLESSYGMQYVPDGYLESYSGNMELKMSKKVVPNCFPTNVKKLLSTGILDGAAVKYIYNPGKVELEGIIGSGGYLCGCSMCSYSRVLSAYEFEQHAGAKTRHPNNHIFLENGKPIYSIIHEIKTAPNSMPDEIIKNVAGASINEETFQVWKESLLESNRKVPAHKNYITKFTGMPHTNNSQSIESESHFLSSRVRNHLEQQVYVNQTSDEWKRVVKKPSTYTYTSGILQKRSTDGCTKKRDNDLHRLLFLPNGLPDGAELAYYVKGQRLLGGYKQGSGIVCSCCDIEISPSQFEAHAGMAARRQPYRHIYTSNGLTLHDIALSLANGQNLTTGDSDDMCAVCGDGGDLILCNGCPRAFHAACLGLHTVPASGWHCLNCKDNTDDERGVRPIMIRLTRVDKEPEYEMGGCVVCRENDFSVDKFDDRTVIICDQCEKEYHVGCLRNIGLCELEELPKEKWFCCDDCSRIYVALQTSVSAGADTIPTRLSELIIRKHKERGLCTYGFMNDIQWRILSGKSRYPEHLPLLSRAAAIFRECFDPIVAISGRDLIPVMVYGRNISGQEFGGMYCIVLIVNSIVVSAGLLRIFGRNIAELPLVATSREYQGKGYFQVLFSCIERLLSSLNVEKLVLPAAGDAESIWTKKLGFHKMSEDQLSKYLREVQLTLFNKTSVLEKTVQLATE* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1571 880 ProSitePatterns Zinc finger PHD-type signature. 539 578 IPR019786 -
Psa6g1571 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 526 605 IPR013083 -
Psa6g1571 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 667 IPR013083 -
Psa6g1571 880 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 764 850 IPR016181 -
Psa6g1571 880 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 23 876 - -
Psa6g1571 880 SUPERFAMILY FYVE/PHD zinc finger 534 581 IPR011011 -
Psa6g1571 880 Gene3D - 706 873 - -
Psa6g1571 880 Pfam Tify domain binding domain 472 521 IPR032308 -
Psa6g1571 880 Pfam Tify domain binding domain 267 318 IPR032308 -
Psa6g1571 880 CDD PHD1_AIRE 538 578 - -
Psa6g1571 880 PANTHER AUTOIMMUNE REGULATOR 23 876 - -
Psa6g1571 880 MobiDBLite consensus disorder prediction 34 65 - -
Psa6g1571 880 ProSitePatterns Zinc finger PHD-type signature. 609 664 IPR019786 -
Psa6g1571 880 SUPERFAMILY FYVE/PHD zinc finger 604 661 IPR011011 -
Psa6g1571 880 Pfam PHD-finger 538 580 IPR019787 -
Psa6g1571 880 ProSiteProfiles Zinc finger PHD-type profile. 536 581 IPR019787 -
Psa6g1571 880 MobiDBLite consensus disorder prediction 104 134 - -
Psa6g1571 880 ProSiteProfiles Zinc finger PHD-type profile. 606 667 IPR019787 -
Psa6g1571 880 MobiDBLite consensus disorder prediction 116 134 - -
Psa6g1571 880 SMART PHD_3 608 665 IPR001965 -
Psa6g1571 880 SMART PHD_3 538 579 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1571 Psa-Chr6 84058279 84068354 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1571 1 880 PHD Transcription Factor Family AT3G53680 53.118 0.0 902
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Psa6g1571 TDBD 5.5e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1571 - - gmx:100808999 1479.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1571 6 84058279 84068354 Psa6g1571 6 84058279 84068354 ECH