Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1570 ATGGGTAACGTAGGAAGTTCACACAATCGTCGGAGACACGGTGGCGGTGGAAGTGGCCGGCGTGTTCATCCTCCGGTGACTCCTCCTCTACAAGAAGCTGCGGCGAACCAATTTGCTCACCCTGCCGCTGCTACAGAGTATCAGAATTATCCCAATTACTATCCTCCGCCGGCGACTGTTTCGATGCCGTTACCGGCACCGTATGATCATCATCACCGTACGGCGATGGACCCGATATATGGACGGTATCCGCCACCACCGCCGGCGCCTTATGTGGAGCATCAGAAAGCTGTTACTATTAGGAATGATGTTAATATCAAGAAGGAGACACTGGGGATTGAACCTGATGAGGAAAATCCTGGGCAGTTTCTTGTTACGTTTACTTTTGATGCCACTGTTTCTGGGAGCATCACAGTACTTTTCTTTGCAAAAGAAGGCGACGGGTGTGTCCTTACTTCGACAAAGGAAAGTGTTCTTGCACCGGTTAATATAAATTTCCAGCAAGGTCTTGGCCAAAAGTTTAGACAGCCAGCCGGAACCGGTATCAATTTCTCAATGTTTGAGGAATCTGAGTTATTGAAAGTGGGCGACGTGGACATCTATCCTGTAGCAGTTAAAGCAGACGCCTCTTCCGGTGCCGAGGATGGATCAAACGAAACTCCAAAATCTGGTAGTAAAACAAACACAAACAACTCTCAGATAACTCAAGCCGTATTTGAGAAGGAGAAAGGAGAGTTTCGGGTGAAGGTTGTTAAACAGATATTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAACTTCGGTCGAAAGTGACTTGGATGGGAATGACCCCGGAAAAGAGTGCGTAATCTGCTTGTCAGAACCTCGTGACACAACTGTCCTTCCTTGTCGCCACATGTGCATGTGTAGCGAATGCGCGAAGGTCTTAAGATTCCAGACAAATAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAGAGTTGGGCCTGAGCCCAAGCCCGAGCCCGAGCCCGAACCCGAGCCCAAGGAGTGA 1062 0.4878 MGNVGSSHNRRRHGGGGSGRRVHPPVTPPLQEAAANQFAHPAAATEYQNYPNYYPPPATVSMPLPAPYDHHHRTAMDPIYGRYPPPPPAPYVEHQKAVTIRNDVNIKKETLGIEPDEENPGQFLVTFTFDATVSGSITVLFFAKEGDGCVLTSTKESVLAPVNINFQQGLGQKFRQPAGTGINFSMFEESELLKVGDVDIYPVAVKADASSGAEDGSNETPKSGSKTNTNNSQITQAVFEKEKGEFRVKVVKQILWVNGMRYELQEIYGIGTSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRFQTNRCPICRQPVERLLEIRVGPEPKPEPEPEPEPKE* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1570 353 SUPERFAMILY RING/U-box 286 332 - -
Psa6g1570 353 Pfam Zinc finger, C3HC4 type (RING finger) 285 331 - -
Psa6g1570 353 ProSiteProfiles Zinc finger RING-type profile. 287 326 IPR001841 -
Psa6g1570 353 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 342 - -
Psa6g1570 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 336 IPR013083 -
Psa6g1570 353 SMART ring_2 287 325 IPR001841 -
Psa6g1570 353 PANTHER MAHOGUNIN 1 342 IPR045194 GO:0061630
Psa6g1570 353 MobiDBLite consensus disorder prediction 210 232 - -
Psa6g1570 353 MobiDBLite consensus disorder prediction 1 23 - -
Psa6g1570 353 MobiDBLite consensus disorder prediction 213 232 - -
Psa6g1570 353 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 286 326 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1570 Psa-Chr6 83922619 83926501 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1570 80 306 C3H Transcription Factor Family AT3G09770 65.236 2.86e-100 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1570 - - gmx:100789032 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1020 3 96116951 96124392 Psa6g1570 6 83922619 83926501 PCT