Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa6g1570 | ATGGGTAACGTAGGAAGTTCACACAATCGTCGGAGACACGGTGGCGGTGGAAGTGGCCGGCGTGTTCATCCTCCGGTGACTCCTCCTCTACAAGAAGCTGCGGCGAACCAATTTGCTCACCCTGCCGCTGCTACAGAGTATCAGAATTATCCCAATTACTATCCTCCGCCGGCGACTGTTTCGATGCCGTTACCGGCACCGTATGATCATCATCACCGTACGGCGATGGACCCGATATATGGACGGTATCCGCCACCACCGCCGGCGCCTTATGTGGAGCATCAGAAAGCTGTTACTATTAGGAATGATGTTAATATCAAGAAGGAGACACTGGGGATTGAACCTGATGAGGAAAATCCTGGGCAGTTTCTTGTTACGTTTACTTTTGATGCCACTGTTTCTGGGAGCATCACAGTACTTTTCTTTGCAAAAGAAGGCGACGGGTGTGTCCTTACTTCGACAAAGGAAAGTGTTCTTGCACCGGTTAATATAAATTTCCAGCAAGGTCTTGGCCAAAAGTTTAGACAGCCAGCCGGAACCGGTATCAATTTCTCAATGTTTGAGGAATCTGAGTTATTGAAAGTGGGCGACGTGGACATCTATCCTGTAGCAGTTAAAGCAGACGCCTCTTCCGGTGCCGAGGATGGATCAAACGAAACTCCAAAATCTGGTAGTAAAACAAACACAAACAACTCTCAGATAACTCAAGCCGTATTTGAGAAGGAGAAAGGAGAGTTTCGGGTGAAGGTTGTTAAACAGATATTGTGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAACTTCGGTCGAAAGTGACTTGGATGGGAATGACCCCGGAAAAGAGTGCGTAATCTGCTTGTCAGAACCTCGTGACACAACTGTCCTTCCTTGTCGCCACATGTGCATGTGTAGCGAATGCGCGAAGGTCTTAAGATTCCAGACAAATAGATGTCCAATCTGCAGACAACCAGTTGAGAGGCTTTTGGAGATCAGAGTTGGGCCTGAGCCCAAGCCCGAGCCCGAGCCCGAACCCGAGCCCAAGGAGTGA | 1062 | 0.4878 | MGNVGSSHNRRRHGGGGSGRRVHPPVTPPLQEAAANQFAHPAAATEYQNYPNYYPPPATVSMPLPAPYDHHHRTAMDPIYGRYPPPPPAPYVEHQKAVTIRNDVNIKKETLGIEPDEENPGQFLVTFTFDATVSGSITVLFFAKEGDGCVLTSTKESVLAPVNINFQQGLGQKFRQPAGTGINFSMFEESELLKVGDVDIYPVAVKADASSGAEDGSNETPKSGSKTNTNNSQITQAVFEKEKGEFRVKVVKQILWVNGMRYELQEIYGIGTSVESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSECAKVLRFQTNRCPICRQPVERLLEIRVGPEPKPEPEPEPEPKE* | 354 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa6g1570 | 353 | SUPERFAMILY | RING/U-box | 286 | 332 | - | - | |
Psa6g1570 | 353 | Pfam | Zinc finger, C3HC4 type (RING finger) | 285 | 331 | - | - | |
Psa6g1570 | 353 | ProSiteProfiles | Zinc finger RING-type profile. | 287 | 326 | IPR001841 | - | |
Psa6g1570 | 353 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE | 1 | 342 | - | - | |
Psa6g1570 | 353 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 271 | 336 | IPR013083 | - | |
Psa6g1570 | 353 | SMART | ring_2 | 287 | 325 | IPR001841 | - | |
Psa6g1570 | 353 | PANTHER | MAHOGUNIN | 1 | 342 | IPR045194 | GO:0061630 | |
Psa6g1570 | 353 | MobiDBLite | consensus disorder prediction | 210 | 232 | - | - | |
Psa6g1570 | 353 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Psa6g1570 | 353 | MobiDBLite | consensus disorder prediction | 213 | 232 | - | - | |
Psa6g1570 | 353 | CDD | mRING-HC-C3HC5_MGRN1_like---blasttree | 286 | 326 | IPR045195 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa6g1570 | Psa-Chr6 | 83922619 | 83926501 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa6g1570 | 80 | 306 | C3H Transcription Factor Family | AT3G09770 | 65.236 | 2.86e-100 | 298 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa6g1570 | - | - | gmx:100789032 | 520.005 |