Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1552 ATGAACTCATCAACACCACCCACACCAACTAGTAACGATGTTTCTGCTGGCAAGAAGGTTAGAAAACCTTACACCATTACTAAATCCAGAGAAAGCTGGTCCGATGAAGAACACGACAAGTTCATCGAAGCTCTTCAACTTTTTGATAGGGATTGGAAGAAGATTGAAGATTTTGTAGGTTCTAAAACTGTTATTCAGATTCGAAGCCATGCTCAAAAATACTTCTTCAAGGTTCAGAAAAATGGAACACTGGCTCATGTTCCTCCTCCTCGTCCTAAGCGGAAAGCTATTCATCCATACCCACAAAAGGCTACCAAAAATGTTTTGGTGCCACTACCAGCATCCATTGCTTATGGATCTTCCTCCAATAACCTTTTACCTGCAGGGTATGTCACATGGGATGAAACTTCCATGATGATGAATACTTGCCAGGATGATCTCAACAATCTTCATGGAAATGAAGCGGATATTATTGGATCAAAGCCGATAAGCAACAGTGGTCTTAGTGGTGTTGAGGACTCGAATACAAGACTCCCCGCATCTCAGATATCATTGCAAGGGAAACAAAATCCTGCGGTTCATGGTTTGCCGGACTTTGCTGAAGTTTATGGTTTCATTGGAAGTGTTTTTGATCCGGATACAAACGGCCATGTGCAGAAGCTGAAAGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTGTCAACCTGTCTAGCCCAAATTTTGATCCCATTAAGAAGGCAATGTCAACATATGATGTGAATAATAATAACGTTGCGGTAGGAGTTACTGATGCGAAGAAGCAGACAAATGATGTATCGTGTCAAACAACATAA 855 0.4058 MNSSTPPTPTSNDVSAGKKVRKPYTITKSRESWSDEEHDKFIEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFFKVQKNGTLAHVPPPRPKRKAIHPYPQKATKNVLVPLPASIAYGSSSNNLLPAGYVTWDETSMMMNTCQDDLNNLHGNEADIIGSKPISNSGLSGVEDSNTRLPASQISLQGKQNPAVHGLPDFAEVYGFIGSVFDPDTNGHVQKLKEMDPINFETVLLLMRNLTVNLSSPNFDPIKKAMSTYDVNNNNVAVGVTDAKKQTNDVSCQTT* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1552 284 ProSiteProfiles SANT domain profile. 28 81 IPR017884 -
Psa6g1552 284 SUPERFAMILY Homeodomain-like 24 80 IPR009057 -
Psa6g1552 284 MobiDBLite consensus disorder prediction 1 15 - -
Psa6g1552 284 PANTHER SWI/SNF COMPLEX-RELATED 8 276 - -
Psa6g1552 284 CDD SANT 32 75 IPR001005 -
Psa6g1552 284 PANTHER PROTEIN REVEILLE 8 8 276 - -
Psa6g1552 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 79 IPR017930 -
Psa6g1552 284 SMART sant 29 77 IPR001005 -
Psa6g1552 284 ProSiteProfiles Myb-like domain profile. 25 75 IPR001005 -
Psa6g1552 284 MobiDBLite consensus disorder prediction 1 31 - -
Psa6g1552 284 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 28 77 IPR006447 GO:0003677
Psa6g1552 284 Gene3D - 33 79 - -
Psa6g1552 284 Pfam Myb-like DNA-binding domain 30 75 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1552 Psa-Chr6 81343666 81346328 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Psa6g1552 Myb_DNA-binding 4.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1552 - - gmx:100797466 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1552 6 81343666 81346328 Psa6g1552 6 81343666 81346328 ECH