Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1551 ATGGCCGCCGCAGCTCGTCCCCTTGTCACTGTCCATTCCCTCGAAGGCGATGCCGCCACCGATTCCGCCGTCACTCTTCCCATCCCCGATGTCATGCGCGCATCCATCCGCCCTGACATAGTCAACTTCGTTCACTCCAACATCTCCAAAAACAGCCGTCAGCCTTACGCCGTCAGCCGCAAAGCCGGTCACCAAACATCTGCTGAGTCATGGGGAACCGGTCGTGCTGTCTCCCGTATCCCTCGTGTCGCTGGTGGTGGTACTCACCGTGCCGGTCAGGCTGCTTTCGGTAACATGTGTCGTGGTGGTCGCATGTTCGCTCCTACCAGGATCTGGCGCAAATGGCACCGAAAGGTCAATGTAAACCAGAAACGTTACGCTGTTGTCTCAGCCATCGCTGCATCCGCAGTGCCTTCCCTTGTTCTTGCTCGTGGCCACCGGATCGAGTCTGTCCCGGAGTTTCCTCTCGTCGTCGGTGATTCCGCTGAGGGAGTCGAGAAGACTAAGGAAGCGATCAAGCTTCTGAAACACATCGGAGCTTTCCCTGACGCCGAGAAAGCAAAGAACAGCCATGGAATCCGTCCAGGAAAAGGTAAGATGCGTAACCGTCGCTATATCTCTCGTAAGGGTCCACTCATTGTTTACGGAACTGAAGGTGCTAAGGCTGTTAAAGCTTTCCGTAACATTCCTGGTGTTGAGATCACCAATGTGGAGAGGTTGAATCTCTTGAAGCTTGCACCTGGTGGTCACTTAGGGAGATTTGTGATCTGGACTAAGACTGCTTTTGAGAAACTGGATTCAATTTATGGGTCTTTTGATAAGCCTTCTGAGAAGAAAAAGGGTTATGTACTACCTAGGGCGAAGATGACTAACTCTGATCTTACCAGGATTATTAATTCTGATGAGGTTCAGTCTGTTGTTAGACCTGTGAAGAAGGACGTGAAACGGGCTACTTTGAAGAAGAATCCATTGAAGAATCTTAATGTTATGCTCAGGCTTAATCCTTATGCTAAGACTGCTAAGAGGATGGCTTTGCTTGCTGAAGCTGAGAGGGTTAAGGCTAAGAAGGAGAAGCTTGATAAGAAAAGGAAGAATATCACTAAGGAAGAAGCTTCTGCAATCAAGGCCGCAGGAAAAGCTTGGTATAATACTATGGTATCAGATTCTGATTACACAGAATTTGATAACTTTTCCAAGTGGTTGGGTGTCTCACAGTGA 1218 0.4918 MAAAARPLVTVHSLEGDAATDSAVTLPIPDVMRASIRPDIVNFVHSNISKNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVAGGGTHRAGQAAFGNMCRGGRMFAPTRIWRKWHRKVNVNQKRYAVVSAIAASAVPSLVLARGHRIESVPEFPLVVGDSAEGVEKTKEAIKLLKHIGAFPDAEKAKNSHGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEITNVERLNLLKLAPGGHLGRFVIWTKTAFEKLDSIYGSFDKPSEKKKGYVLPRAKMTNSDLTRIINSDEVQSVVRPVKKDVKRATLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAERVKAKKEKLDKKRKNITKEEASAIKAAGKAWYNTMVSDSDYTEFDNFSKWLGVSQ* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1551 405 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Psa6g1551 405 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Psa6g1551 405 Pfam Ribosomal protein L4/L1 family 28 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Psa6g1551 405 PANTHER BNAC03G35890D PROTEIN 2 405 - -
Psa6g1551 405 SUPERFAMILY Ribosomal protein L4 8 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Psa6g1551 405 PANTHER 60S RIBOSOMAL PROTEIN L4 2 405 IPR045240 -
Psa6g1551 405 Coils Coil 342 372 - -
Psa6g1551 405 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1551 Psa-Chr6 81272780 81276002 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1551 2 405 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.178 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1551 K02930 - gmx:100779764 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1551 6 81272780 81276002 Psa6g1551 6 81272780 81276002 ECH