Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1544 ATGAAGTTCTCTTTTCCTGCTTGTTTATTTTCATGTTCTACTGAAGTTAACAACAACGATTTTGCTGATGGAGAGATTAATGATGGAAGCTTTCGTGTATTCACTTATCAACAATTGAAATCTGCTACTGGTAATTTCAGTAGCAAAATTGGACAAGGTGGATTTGGTTCTGTGTATAAGGGGAGGCTTAAGGATGGATCTTTTGTTGCTGTGAAAGTTCTTTCTATTGAGATTGAATCCATGAGAGGAGAAAGAGAATTTGTTGCGGAATTAGCTACACTAGCAAATATGAAGCATCATAATCTTGTTAGCCTTAAAGGGTGTTGTGTTGAAGGAGCAAAGAGATATTTAGTTTATGAGTACATGGAGAACAATAGCCTTCATCACACTTTCTTAGGTTCTGAGGATAAACGGGAGAGATTCAGTTGGGAAGAAAGGAAGAGTATATCGATCGGTGTGGCTCGTGGACTTTCGTATCTCCATGAGGAGTTGAAGCCTCATATAGTGCATAGAGATATCAAAGCCAAGAATATACTAATTGACAGAAGTTTTACGCCGAAACTTGCAGATTTTGGTTTGGCGAAACTAATGAGAGATGAAAAGTCTTACATTAGCACTAGAGTTGCAGGGACATTGGGTTATTTGGCGCCGGAGTATGCTAGTTCTGGACAACTGAGAAGAAAATCAGATGTTTATAGCTTTGGAGTATTGCTTTTACAAGTTATCACTGGCTTGGCTGTTGTAGACGCATATAAAGATATCGAACGTTTCATTGTAGAAAAGGCTTATGCAGCTTATGAGGCCAATGATCTATTAAGAATTGTGGATCCTGTGCTTAATAGAAACTATTCAGCAAAAGAAGCCATAAAATTCCTCAAAGTTGGATTACTTTGCGTGCAAGAAAATGCGAGATTACGGCCACGAATGTCAGAGGTTGTAGAAATATTGACCAATAGCAATGTTGATCTCAAAGATGTTCACATTTCAAAACCAGGATTTGTTGCTGATCTCAGAAACATCAGAATAAAACAGAACATGACAACAAGCTCGCCACAAGAATCAGGGTCCTCGGGAACAACCTTTGCAAGCTCCATTTGGAGTGTGGGAAATCTCGCCCGTTAA 1122 0.3886 MKFSFPACLFSCSTEVNNNDFADGEINDGSFRVFTYQQLKSATGNFSSKIGQGGFGSVYKGRLKDGSFVAVKVLSIEIESMRGEREFVAELATLANMKHHNLVSLKGCCVEGAKRYLVYEYMENNSLHHTFLGSEDKRERFSWEERKSISIGVARGLSYLHEELKPHIVHRDIKAKNILIDRSFTPKLADFGLAKLMRDEKSYISTRVAGTLGYLAPEYASSGQLRRKSDVYSFGVLLLQVITGLAVVDAYKDIERFIVEKAYAAYEANDLLRIVDPVLNRNYSAKEAIKFLKVGLLCVQENARLRPRMSEVVEILTNSNVDLKDVHISKPGFVADLRNIRIKQNMTTSSPQESGSSGTTFASSIWSVGNLAR* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1544 373 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Psa6g1544 373 Gene3D Phosphorylase Kinase; domain 1 16 121 - -
Psa6g1544 373 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 8 343 - -
Psa6g1544 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Psa6g1544 373 CDD STKc_IRAK 50 318 - -
Psa6g1544 373 ProSiteProfiles Protein kinase domain profile. 44 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1544 373 Pfam Protein kinase domain 47 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1544 373 SMART serkin_6 44 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1544 373 PANTHER RECEPTOR-LIKE KINASE 8 343 - -
Psa6g1544 373 Gene3D Transferase(Phosphotransferase) domain 1 122 330 - -
Psa6g1544 373 SUPERFAMILY Protein kinase-like (PK-like) 27 316 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1544 Psa-Chr6 80517769 80520623 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1544 15 316 Receptor kinase-like Gene Family AT1G53430 49.511 1.33e-91 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Psa6g1544 Pkinase 1.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1544 - - gmx:100813945 555.829