Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1543 ATGCAAATTCCGTTTAACCCTTCTCAATTATCATCACTCAGATTCTTATTCATTCTTCTCTGTTTCTTTCATGGTGCAAATGGGTTTGGCACCATGGGACCAATCTCAGCTTCGTTTGGAGAATACGAAGTGTTTTGTTCCATTGATGCTAGTGGAAAACAAGACGTTATTTGTTGGGGGAAAAACACCACTTCACCGCAACCTCTTTCGTCTTCCGCTTATGTTACGAACATTCCGGCCATGTCAGCGCTTTCTGGCGGTGAAGGTTTTCTATGCGGTATTTTAGCAAACACTTCGCAAGCGTTTTGTTGGGCTGCGACTTCGAAACAAAACGCAGATCCCGTTTTGGTTCCTTCGTTGTACAGGAACACTGCGTACTCTCGTATAGCGGCTGGGAAGAGTCATGTCTGTGCTGTCAGAGGTTCTTACTACTCCGATCGTGATTCCGGAACTGTGGATTGCTGGCAAATCTCGAAGAGAAGTAAGAACGGTACGCTAACGGCGGTGGTTAATGATTTGTTCTCTGATCAATCTGTTATTAATCTTGAAATGAACAGTGTTGTTTCCGGTGAAGGGTTTACGTGTGGTGGGGTAAGAGATGGAGGGTTGGTTTGTTGGGGACCCAATTCAACAAGCCTGAAAGTTTCCAATGTTTCTGATAGTTTTTCTGTTTTAGCTGCGGGGAGAATGGCAGTGTGCGGTGTTTCGAATATCTCCGGTGATGTGAGATGCTGGGGCGATATCGAGCCTCCGAGAACCGAGATTTCTTTCGTTTCGCTCTCTGGCGGGGCGCATCATTTCTGCGGCGTTCGAGAGGATAATCATGTGGTTCAATGTTGGGGTAATTTGAGTTCATCTTTGGTTCCAAAAGGTTATGGCTTTTTGGCAATTGCTTCTTCGGATTACACAACTTGTGGTATAAGGGAAGATGATCTTCTTCTAGATTGTTGGTTGGTCAACGCTTCAAAGCCTGATTTTGACCCTCCTTTAGAGCTTTCAAGTCCTGGTCTTTGCAGGTCAAGTTCTTGTGGAGTCAATGAGTTTGATTTCAATGTTAGTGTTCTTAATGAGCCTGATTTGACAAGCTTATGTGTAAGACAGGATTTGAGGATTTGTTCGCCTTGTGGGTATAACTGTTCACAAGGATTCTTTTTGTCTAGTCCTTGTACTCAAAATTATGATAGAGTTTGCACAGCTTGTTCTCTATGTCAGAACAGTTCTTGTTTGAGTGTTTGCAGACTTCATTCTTCGAACGGGTTTTTTCATTGGCATCATATCCGTAGATGGGTTGTCATAATTGGATCTTCTGCTTTGTGTTTGTTGCTGATTTTGGTTTGTGGGTGTTTTTTCCGATGCTGTGCTTGTTCAAGGGGACAACGACATGGGACAAAGAAACATTCCAAGTCTTGTATCGGTAAACATGAACAAGAAAACGATGATGACGTGAATGGTAATGGTAATGGTCTTCTTCACTCGTTTCCTTCGGCTGCTTCTTGTCCTGGTTTGCCTCAGGTTTTCAGGCTTTCAGAGTTGAAAGACGCTACCAATGGTTTCAAGGAGTTTAATGAGCTTGGCAGAGGAAGTCATGGATTTGTTTACAAAGCTGCTTTGGCTGATGGGAGAGTGGTTGCGGTGAAAAGAGCAAACGCTGCCACAATAATACACACCAACAATCGCGACTTTGAAATGGAGTTGGAAATTTTGTGCAAAATTCGTCACTGTAATGTTGTTAACTTGTTGGGTTACTGTGCTGAGATGGGAGAGAGGTTGCTTGTTTATGAGTATATGTCTCATGGAACACTTTCTGATCACATTCATGGTGGTCTTTCTCCTCTTAATTGGAGCTTAAGGCTTAAGATAGCTATGCAATCAGCAAAGGGGGTTGAGTATCTTCACAAGGAGCTATCGCCTCCAATTGTTCATAAGGATCTAAAGAGTTCCAGCATTCTTTTGGATTCAGAATGGGGGGCTAGAGTTTCCGATTTCGGACTTGTTATTTCGAGTGATAAAGATCTTAACAGGGACATGGAAAGTGATGTTTACAGCTTTGGGATAGTGCTGTTGGAGATTCTAAGTGGAAGGAAGGCTCATGATATAGATTTTGATCCACCTAATGTTGTTGAGTGGGCAGTGCCTTTGATTAAACAAGGTAAAGCAGCTGCAATAATTGATCGCAGCATCGCTCTTCCGAGAAATGTCGAGCCTTTGCTTAAGCTAGGCGATATAGCAGAGCTGGCTGTAAGAGAGAATCCGAGTGAACGTCCATCTATGTCGGATATAGCATCTTGGTTGGAGCAGATTGTGAAGGATGGATTGATCTTATAA 2325 0.4314 MQIPFNPSQLSSLRFLFILLCFFHGANGFGTMGPISASFGEYEVFCSIDASGKQDVICWGKNTTSPQPLSSSAYVTNIPAMSALSGGEGFLCGILANTSQAFCWAATSKQNADPVLVPSLYRNTAYSRIAAGKSHVCAVRGSYYSDRDSGTVDCWQISKRSKNGTLTAVVNDLFSDQSVINLEMNSVVSGEGFTCGGVRDGGLVCWGPNSTSLKVSNVSDSFSVLAAGRMAVCGVSNISGDVRCWGDIEPPRTEISFVSLSGGAHHFCGVREDNHVVQCWGNLSSSLVPKGYGFLAIASSDYTTCGIREDDLLLDCWLVNASKPDFDPPLELSSPGLCRSSSCGVNEFDFNVSVLNEPDLTSLCVRQDLRICSPCGYNCSQGFFLSSPCTQNYDRVCTACSLCQNSSCLSVCRLHSSNGFFHWHHIRRWVVIIGSSALCLLLILVCGCFFRCCACSRGQRHGTKKHSKSCIGKHEQENDDDVNGNGNGLLHSFPSAASCPGLPQVFRLSELKDATNGFKEFNELGRGSHGFVYKAALADGRVVAVKRANAATIIHTNNRDFEMELEILCKIRHCNVVNLLGYCAEMGERLLVYEYMSHGTLSDHIHGGLSPLNWSLRLKIAMQSAKGVEYLHKELSPPIVHKDLKSSSILLDSEWGARVSDFGLVISSDKDLNRDMESDVYSFGIVLLEILSGRKAHDIDFDPPNVVEWAVPLIKQGKAAAIIDRSIALPRNVEPLLKLGDIAELAVRENPSERPSMSDIASWLEQIVKDGLIL* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1543 774 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR1 32 772 - -
Psa6g1543 774 ProSitePatterns Protein kinases ATP-binding region signature. 524 546 IPR017441 GO:0005524
Psa6g1543 774 Gene3D Phosphorylase Kinase; domain 1 496 595 - -
Psa6g1543 774 PANTHER OS01G0750732 PROTEIN 32 772 - -
Psa6g1543 774 Gene3D - 21 212 IPR009091 -
Psa6g1543 774 Gene3D - 213 321 IPR009091 -
Psa6g1543 774 ProSiteProfiles Protein kinase domain profile. 518 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1543 774 SUPERFAMILY RCC1/BLIP-II 40 285 IPR009091 -
Psa6g1543 774 Pfam Protein tyrosine and serine/threonine kinase 522 670 IPR001245 GO:0004672|GO:0006468
Psa6g1543 774 SUPERFAMILY Protein kinase-like (PK-like) 496 765 IPR011009 -
Psa6g1543 774 Gene3D Transferase(Phosphotransferase) domain 1 674 771 - -
Psa6g1543 774 Gene3D Transferase(Phosphotransferase) domain 1 596 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1543 Psa-Chr6 79772449 79775356 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1543 16 768 Receptor kinase-like Gene Family AT3G59420 30.482 4.18e-109 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Psa6g1543 PK_Tyr_Ser-Thr 2.3e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1543 - - gmx:100802259 1167.14