Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1528 ATGGATTGGGTTCGAGGTCAGTTTTTAGGTAGGGGAAACTTCGCCACGGTTAATTTAGCCACACATATAAAACATTCTCTTAATTTTTCGTGTATCACCGCCGTCAAATCCTCCGAAGAATACACCTCGCATTTTCTCCAAAAAGAGAAACATATACTAGATCGTTTAGGTTCTTCCCCGTATATTATCAAGTGTTTTGGTCACGATCATACTTTTGAAGACGACCAAGAGTGTTATAATATATTTCTTGAATACGCCGTTGGTGGAACACTTTTCGATCAGCTCAAAAATCATGGGGGTAAGTTCTCGGAAACTCCCGTTCGCCGTTACACGAGGTCTGTTGTAGAAGGACTTAAACACATTCATGAAAGTGGTTTCGTTCATTGTGACGTGAAGTTACAAAACATCCTAGTATTCGATCAAGGAAATGTTAAGATTTCATATTTTGGTCTTGCAAAGGTGGAAGGTTTAGAACATGGTGAGAAGAAGTTGAAATGCCGAGGAACTCCTATTTTTATGGTGCCAGAGTCGATTAATGATAGTATTTATGAGTCTCCGGTGGATATTTGGGCTCTTGGTTGCGCTGTCGTGGAGATGATTACCGGTAAACCAACATGGAATATGAGTAGCAAGGCAAATATGTGGTCGTTGAAGATTCATATTGGGATTGGGGAAGAGTTACCTTTGATTCCAAATGAATTATCAGAAGAAGGCAAAGATTTTCTTAATAAGTGTTTTGTTAAAGATCCTTTAAAAAGATCGAGTCTTGAAATGCTTTTAAAACACCCTTTTATTTCGGATGATGAAACTCTTTTATCTTTAAAAGGGTTAATAAATAAGTCGCAATTACCATTGATGTCTCCCAGAACTCATTTGGATTATTCTCAATGGGCTTCTTGTGAAGACTTTACCGATGAAGACTCCAACAATTTATTACGTTGTTACAGATCAAAAGCCGTAAGGTTGGTTAGTAAATTAGAATTTTGA 987 0.3759 MDWVRGQFLGRGNFATVNLATHIKHSLNFSCITAVKSSEEYTSHFLQKEKHILDRLGSSPYIIKCFGHDHTFEDDQECYNIFLEYAVGGTLFDQLKNHGGKFSETPVRRYTRSVVEGLKHIHESGFVHCDVKLQNILVFDQGNVKISYFGLAKVEGLEHGEKKLKCRGTPIFMVPESINDSIYESPVDIWALGCAVVEMITGKPTWNMSSKANMWSLKIHIGIGEELPLIPNELSEEGKDFLNKCFVKDPLKRSSLEMLLKHPFISDDETLLSLKGLINKSQLPLMSPRTHLDYSQWASCEDFTDEDSNNLLRCYRSKAVRLVSKLEF* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1528 328 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 306 - -
Psa6g1528 328 ProSiteProfiles Protein kinase domain profile. 3 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1528 328 SMART serkin_6 3 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1528 328 Gene3D Transferase(Phosphotransferase) domain 1 2 319 - -
Psa6g1528 328 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Psa6g1528 328 SUPERFAMILY Protein kinase-like (PK-like) 3 295 IPR011009 -
Psa6g1528 328 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Psa6g1528 328 Pfam Protein kinase domain 5 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1528 328 CDD STKc_MAPKKK 2 265 - -
Psa6g1528 328 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1528 Psa-Chr6 77456230 77457216 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1528 1 299 MAP Kinase Kinase Kinase AT3G50310 48.197 1.52e-98 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Psa6g1528 Pkinase 1.7e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1528 - - gmx:100797177 381.333