Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1527 ATGGCGAGGATTAAGGTGTACGAGTTGAGGAACAAAACCAAAGCGGATTTGCTGAACCAGCTGAAGGATCTGAAGGCGGAGCTTGCTTTGCTCCGAGTGGCGAAAGTCACCGGCGGCGCACCGAATAAGCTATCCAAAATTAAAGTTGTTAGGCTTTCGATAGCACAAGTGTTGACAGTGATTTCACAGAAGCAGAAAGCTGCACTTAGAGAAGTATACAAGAATAAGAAGTATTTGCCACTCGATCTTCGTCCCAAGAAGACCCGTGCCATTCGAAGACGGCTTACCAAAAATCAGGCATCGTTGAAGACAGAGCGAGAGAAGAAGAAGGAGATATACTTTCCATTAAGAAAACAAGGATTTGTCATTGAAGGGAAAACTGATGGTCAGGCTGAAGCTGATATTGGTGTTCATCTTAGTCAGTTGAACCTTAAGCATAAGATGTATGTTCCAGATATTGCTCTCCACAATATTCAACATGTTAATAAGTATGATCTAGTAGTTGGTGGAAATGTGACCGATGTCCCACTCATGTATGGGCATATAAGAAATCATCATCTAATTCAGGAGTCTTTTGGTAAGGAGACCCAAGAAACCAATATGAGAAATCAAGATGTTGTTAAAGATGTGCCAGACATCCTATCTGACATGTTGGCAAAGTCTCAAATTCATAAGGAGAATGATAACGTGACCCCTGAGAATAATTTTGTGAGTGATGATGACCATGGAGATGTTTAG 738 0.4146 MARIKVYELRNKTKADLLNQLKDLKAELALLRVAKVTGGAPNKLSKIKVVRLSIAQVLTVISQKQKAALREVYKNKKYLPLDLRPKKTRAIRRRLTKNQASLKTEREKKKEIYFPLRKQGFVIEGKTDGQAEADIGVHLSQLNLKHKMYVPDIALHNIQHVNKYDLVVGGNVTDVPLMYGHIRNHHLIQESFGKETQETNMRNQDVVKDVPDILSDMLAKSQIHKENDNVTPENNFVSDDDHGDV* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1527 245 SUPERFAMILY Ribosomal protein L29 (L29p) 4 65 IPR036049 GO:0003735|GO:0005840|GO:0006412
Psa6g1527 245 Gene3D - 1 77 IPR036049 GO:0003735|GO:0005840|GO:0006412
Psa6g1527 245 Hamap 50S ribosomal protein L29 [rpmC]. 4 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Psa6g1527 245 MobiDBLite consensus disorder prediction 223 245 - -
Psa6g1527 245 TIGRFAM L29: ribosomal protein uL29 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Psa6g1527 245 Pfam Ribosomal L29 protein 8 64 IPR001854 GO:0003735|GO:0005840|GO:0006412
Psa6g1527 245 PANTHER 60S RIBOSOMAL PROTEIN L35-LIKE 1 119 - -
Psa6g1527 245 Gene3D - 78 119 - -
Psa6g1527 245 CDD Ribosomal_L29_HIP 8 64 - -
Psa6g1527 245 PANTHER 60S RIBOSOMAL PROTEIN L35 1 119 IPR045059 GO:0000463|GO:0022625
Psa6g1527 245 Coils Coil 7 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1527 Psa-Chr6 76877872 76884404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1527 1 123 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 84.553 4.30e-67 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1527 K02918 - gmx:100778013 216.083