Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1519 ATGGCGGCATCTCGGCGTCTCCGGGAGCTGCAATCCCAACCCGGCAACAAGATCTGCGTCGATTGCTCTCAGAAGAATCCACAGTGGGCTTCAGTCTCCTACGGCATCTTCATGTGCCTTGAGTGCTCCGGCAAGCACCGTGGCCTCGGAGTCCACATCTCGTTCGTCCGATCTGTCACCATGGATGCCTGGTCCGAAATCCAAATCAAAAAAATGGAAGCCGGTGGTAACGACAGTCTCAACGCTTTCCTTGCACGATATTCAATTCCGAAGGAAACCGATATCGTCACTAAGTATAACACCAACGCCGCTTCCATTTATCGTGATAGGATCCAGGCGATTGCGGAAGGACGTTCGTGGCGCGATCCGCCTGTTGTTAAGGAGAATATTGGTTCCGGAAGTAAGGGGAGGCCGCCGATGTCACAGACTCGCCGGAGTAATGATTCCGGATGGGATGATTGGGATAGAGAAGGAAATTCTGGAAGTTCTGTTGATGTGAGGAGTAAGTCGACTGGGGATTTCAGAAGCTTGAACGGTGGTGGTGCGCCGGCGAGATCGAGGTCGACGGAGGATATTTACACGCGGTCGCAGTTGGAGGCGTCTGCGGCGAATAAGGAGGGTTTCTTCGCGAAGAGGATGGCAGAGAATGAGTCGCGACCGGAAGGACTTCCGCCGTCGCAGGGTGGGAAGTATGTTGGATTTGGATCCAGTCCTGCGCCTTCTTCGCAAAGGAGTAATCCGCAAAACGACTATTTCTCTGTTGTTTCTCAGGGGATTGGTAAGTTGTCACTGGTTGCTGCTTCTGCTGCTAATGTTGTTCAGGCTGGCAGGAAAGAGATCACTTCTAAGGTCAAGGAAGGTGGTTATGATCAAAAGGTCAACGAAACTGTCACTGTTGTCACTCAAAAGACATCAGAGATAGGTCAAAGGACATGGGGTTTAATGAAAGGGGTCATGGCTTTGGCTTCACAGAAGGTTGAGGAGTACACTAAAGAAAACTCAGATTGGAAGGCTGACAACTGGCAACGGAATGAGAGTGGTAGAAATGGCTACTATCAGGATTTCAATCAAGAGAACAAAGGCAGTAATTCTTCTACTGGAAGAGAACAATCTTCATCAGGGCAATTCAAAACTCACAGTTCAAACTCTTGGGATGATTGGGACCAGAAAGATAGTTTGAAGGTAGAACCAACTAAAGGATCAGCTCCTTATTCGTCCGGTAGTCACAATCCAAGCTCTTGGGATGATTGGGACCACAAAGATTCTAGGAAGGAAGAACCCGCTAAAGGATCGGCTCCCCATAATAATAACGATGCTGGTTGGGCTGGCTGGGATAATGCCAAAGATGATGGATTTGATAACTTCTATGAAGGTGCTTCTAATAAGAAAACTGTTGGACATAATGGGAAATCAGATGACGCTTGGACTGGAGGTGGCTTTCTCTAA 1446 0.4869 MAASRRLRELQSQPGNKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDAWSEIQIKKMEAGGNDSLNAFLARYSIPKETDIVTKYNTNAASIYRDRIQAIAEGRSWRDPPVVKENIGSGSKGRPPMSQTRRSNDSGWDDWDREGNSGSSVDVRSKSTGDFRSLNGGGAPARSRSTEDIYTRSQLEASAANKEGFFAKRMAENESRPEGLPPSQGGKYVGFGSSPAPSSQRSNPQNDYFSVVSQGIGKLSLVAASAANVVQAGRKEITSKVKEGGYDQKVNETVTVVTQKTSEIGQRTWGLMKGVMALASQKVEEYTKENSDWKADNWQRNESGRNGYYQDFNQENKGSNSSTGREQSSSGQFKTHSSNSWDDWDQKDSLKVEPTKGSAPYSSGSHNPSSWDDWDHKDSRKEEPAKGSAPHNNNDAGWAGWDNAKDDGFDNFYEGASNKKTVGHNGKSDDAWTGGGFL* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1519 481 SUPERFAMILY ArfGap/RecO-like zinc finger 5 112 IPR037278 -
Psa6g1519 481 MobiDBLite consensus disorder prediction 359 445 - -
Psa6g1519 481 MobiDBLite consensus disorder prediction 413 431 - -
Psa6g1519 481 CDD ArfGap_ArfGap1 3 117 - -
Psa6g1519 481 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Psa6g1519 481 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Psa6g1519 481 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Psa6g1519 481 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Psa6g1519 481 Coils Coil 319 339 - -
Psa6g1519 481 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Psa6g1519 481 MobiDBLite consensus disorder prediction 148 162 - -
Psa6g1519 481 Pfam Putative GTPase activating protein for Arf 5 94 IPR001164 GO:0005096
Psa6g1519 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 406 481 - -
Psa6g1519 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 403 - -
Psa6g1519 481 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Psa6g1519 481 MobiDBLite consensus disorder prediction 118 191 - -
Psa6g1519 481 MobiDBLite consensus disorder prediction 458 481 - -
Psa6g1519 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 406 481 IPR044519 GO:0005096|GO:0016192
Psa6g1519 481 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 403 IPR044519 GO:0005096|GO:0016192
Psa6g1519 481 MobiDBLite consensus disorder prediction 359 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1519 Psa-Chr6 75652253 75655820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1519 5 83 C2H2 Transcription Factor Family AT4G05330 51.250 1.34e-22 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1519 K12492 - gmx:100806519 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1519 6 75652253 75655820 Psa6g1519 6 75652253 75655820 ECH