Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Psa6g1519 | ATGGCGGCATCTCGGCGTCTCCGGGAGCTGCAATCCCAACCCGGCAACAAGATCTGCGTCGATTGCTCTCAGAAGAATCCACAGTGGGCTTCAGTCTCCTACGGCATCTTCATGTGCCTTGAGTGCTCCGGCAAGCACCGTGGCCTCGGAGTCCACATCTCGTTCGTCCGATCTGTCACCATGGATGCCTGGTCCGAAATCCAAATCAAAAAAATGGAAGCCGGTGGTAACGACAGTCTCAACGCTTTCCTTGCACGATATTCAATTCCGAAGGAAACCGATATCGTCACTAAGTATAACACCAACGCCGCTTCCATTTATCGTGATAGGATCCAGGCGATTGCGGAAGGACGTTCGTGGCGCGATCCGCCTGTTGTTAAGGAGAATATTGGTTCCGGAAGTAAGGGGAGGCCGCCGATGTCACAGACTCGCCGGAGTAATGATTCCGGATGGGATGATTGGGATAGAGAAGGAAATTCTGGAAGTTCTGTTGATGTGAGGAGTAAGTCGACTGGGGATTTCAGAAGCTTGAACGGTGGTGGTGCGCCGGCGAGATCGAGGTCGACGGAGGATATTTACACGCGGTCGCAGTTGGAGGCGTCTGCGGCGAATAAGGAGGGTTTCTTCGCGAAGAGGATGGCAGAGAATGAGTCGCGACCGGAAGGACTTCCGCCGTCGCAGGGTGGGAAGTATGTTGGATTTGGATCCAGTCCTGCGCCTTCTTCGCAAAGGAGTAATCCGCAAAACGACTATTTCTCTGTTGTTTCTCAGGGGATTGGTAAGTTGTCACTGGTTGCTGCTTCTGCTGCTAATGTTGTTCAGGCTGGCAGGAAAGAGATCACTTCTAAGGTCAAGGAAGGTGGTTATGATCAAAAGGTCAACGAAACTGTCACTGTTGTCACTCAAAAGACATCAGAGATAGGTCAAAGGACATGGGGTTTAATGAAAGGGGTCATGGCTTTGGCTTCACAGAAGGTTGAGGAGTACACTAAAGAAAACTCAGATTGGAAGGCTGACAACTGGCAACGGAATGAGAGTGGTAGAAATGGCTACTATCAGGATTTCAATCAAGAGAACAAAGGCAGTAATTCTTCTACTGGAAGAGAACAATCTTCATCAGGGCAATTCAAAACTCACAGTTCAAACTCTTGGGATGATTGGGACCAGAAAGATAGTTTGAAGGTAGAACCAACTAAAGGATCAGCTCCTTATTCGTCCGGTAGTCACAATCCAAGCTCTTGGGATGATTGGGACCACAAAGATTCTAGGAAGGAAGAACCCGCTAAAGGATCGGCTCCCCATAATAATAACGATGCTGGTTGGGCTGGCTGGGATAATGCCAAAGATGATGGATTTGATAACTTCTATGAAGGTGCTTCTAATAAGAAAACTGTTGGACATAATGGGAAATCAGATGACGCTTGGACTGGAGGTGGCTTTCTCTAA | 1446 | 0.4869 | MAASRRLRELQSQPGNKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDAWSEIQIKKMEAGGNDSLNAFLARYSIPKETDIVTKYNTNAASIYRDRIQAIAEGRSWRDPPVVKENIGSGSKGRPPMSQTRRSNDSGWDDWDREGNSGSSVDVRSKSTGDFRSLNGGGAPARSRSTEDIYTRSQLEASAANKEGFFAKRMAENESRPEGLPPSQGGKYVGFGSSPAPSSQRSNPQNDYFSVVSQGIGKLSLVAASAANVVQAGRKEITSKVKEGGYDQKVNETVTVVTQKTSEIGQRTWGLMKGVMALASQKVEEYTKENSDWKADNWQRNESGRNGYYQDFNQENKGSNSSTGREQSSSGQFKTHSSNSWDDWDQKDSLKVEPTKGSAPYSSGSHNPSSWDDWDHKDSRKEEPAKGSAPHNNNDAGWAGWDNAKDDGFDNFYEGASNKKTVGHNGKSDDAWTGGGFL* | 482 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Psa6g1519 | 481 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 5 | 112 | IPR037278 | - | |
Psa6g1519 | 481 | MobiDBLite | consensus disorder prediction | 359 | 445 | - | - | |
Psa6g1519 | 481 | MobiDBLite | consensus disorder prediction | 413 | 431 | - | - | |
Psa6g1519 | 481 | CDD | ArfGap_ArfGap1 | 3 | 117 | - | - | |
Psa6g1519 | 481 | PRINTS | HIV Rev interacting protein signature | 16 | 35 | IPR001164 | GO:0005096 | |
Psa6g1519 | 481 | PRINTS | HIV Rev interacting protein signature | 35 | 52 | IPR001164 | GO:0005096 | |
Psa6g1519 | 481 | PRINTS | HIV Rev interacting protein signature | 56 | 77 | IPR001164 | GO:0005096 | |
Psa6g1519 | 481 | Gene3D | Arf GTPase activating protein | 1 | 129 | IPR038508 | - | |
Psa6g1519 | 481 | Coils | Coil | 319 | 339 | - | - | |
Psa6g1519 | 481 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 4 | 120 | IPR001164 | GO:0005096 | |
Psa6g1519 | 481 | MobiDBLite | consensus disorder prediction | 148 | 162 | - | - | |
Psa6g1519 | 481 | Pfam | Putative GTPase activating protein for Arf | 5 | 94 | IPR001164 | GO:0005096 | |
Psa6g1519 | 481 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED | 406 | 481 | - | - | |
Psa6g1519 | 481 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED | 1 | 403 | - | - | |
Psa6g1519 | 481 | SMART | arf_gap_3 | 4 | 120 | IPR001164 | GO:0005096 | |
Psa6g1519 | 481 | MobiDBLite | consensus disorder prediction | 118 | 191 | - | - | |
Psa6g1519 | 481 | MobiDBLite | consensus disorder prediction | 458 | 481 | - | - | |
Psa6g1519 | 481 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED | 406 | 481 | IPR044519 | GO:0005096|GO:0016192 | |
Psa6g1519 | 481 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED | 1 | 403 | IPR044519 | GO:0005096|GO:0016192 | |
Psa6g1519 | 481 | MobiDBLite | consensus disorder prediction | 359 | 382 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Psa6g1519 | Psa-Chr6 | 75652253 | 75655820 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Psa6g1519 | 5 | 83 | C2H2 Transcription Factor Family | AT4G05330 | 51.250 | 1.34e-22 | 97.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Psa6g1519 | K12492 | - | gmx:100806519 | 804.668 |