Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1496 ATGAATCACTGTGTTCCAGATTTCGATATTCAAATCGACGAATATGAAGAAAACCCGGTGCTTCTCTCTAAGAAACCTTCCACTGCGCGAAACAATGAGATCATGGAACTGTTATGGCAAAACGGTTCAGTCGTGATGCACAACCAAAGCCACCGCCAATCTAAAAAACCGCCATCACCGGTAACTAACACCGGCAATCAAGTGATGCCTGATCATAGAGAGATTCGATCCTCCGATGTAGAAAACTTCAATATTAATCAACATTTGTTCATGCAAGAAGATGAAATGGCATCGTGGCTTTTCGATTCAATCAACGAAGATCCTCTTATCAACACTGAAACACTCTTTCATCCATCCACCGGTGTTATACCGGACTATGTAGTTCCGCCTGAGGAGTTACTTCCACAACCGAGACCAATGGCTTCTCGGCCTCCGATTCATCCTGCCACGGAGGAGAAGGAGGATCAAGTGTTGAATGGAAAACACAATAATTTCGCATATTTTGCTAACCACAACAATGCTAGTATGGAACCAAGTATGTCTTCAAGTTCGGTGATTCCGGCTAGGCCAGAAATGACCATGGTGGATTCATGCGATACACCGGTCATGACTGAGATGACTTATAAGGCTTCGAAGCTATCTGAAACAATCAGGAGCACCGCGTATACGGAATGCGTGAGTGTTAGCACGGCCGGAAAAGCAACGGCATATACCGGATGTGGTACTGTAAGCAAGGCTGGAAAAGATGCAGCTGCAACTGCAACCATTAATGGAGTAAGAGAGACTCCAATGTTGAATATTACAATGACGTCATCGCATAACTGTTCAAGTGGAAGTGTTGATCCGATTCAGAGAAAACTGGAGTTAGAACGAAAGGGGAAAGATCGTGTATCAGACAAATCAAAGTTTCAGAGCCAGAGCCAGAGCGAGGAAGGAAAAAAGGAAGGAAAAAAACAAGTTCGTGGATCTACATCTACAAAGAGATCCCGTGCTGCAGAGGTTCATAATCTCTCAGAGAGGAAGCGTCGAGATAGAATTAACGAAAAGATGAAAGCTTTGCAAGAACTTATACCCCGGTGCAACAAGTCTGACAAAGCTTCAATGTTGGATGAAGCAATCGAATACTTGAAGTCATTGCAGTTACAAGTGCAGATGATGTCCATGGGATGCGGCATGGGACCGATGATGTATCCTGGAATCCAGCAGTATATGCCATCGATGGGGATGAGAATGGGCATGGGGATGGGGATGGGAATGGGAATGAGTTTGGGGATGGAAATGGGAATGAACAGACCATTGATGCCATTTTCTAATATATTACCTCCTAGTTCTCCTTTGCCAACAACAACAACAGAAGCTACTCCCTATGGACCAAGGTTCCCTATGCCTCCTTTTCATATGCCTCAGCCTCATGTTCCTGCAGTACCTGAATCATCAGATAACCCCCTTAACTCCCTCGGTACTCTGCTTCCAGATCAATCACGCATCCCAAACACAAACTTCACCGATCCTTATCAGCAAATCCTTACTCCCCACCAGGTGCAGCAATTTATGCAGGGAACGAACCAACAAAATGTCAACAGGCCAGGTAACAGTGGGGGCCAGGATAATCCAGAAAAGCATCGGGCAGGATAG 1635 0.4514 MNHCVPDFDIQIDEYEENPVLLSKKPSTARNNEIMELLWQNGSVVMHNQSHRQSKKPPSPVTNTGNQVMPDHREIRSSDVENFNINQHLFMQEDEMASWLFDSINEDPLINTETLFHPSTGVIPDYVVPPEELLPQPRPMASRPPIHPATEEKEDQVLNGKHNNFAYFANHNNASMEPSMSSSSVIPARPEMTMVDSCDTPVMTEMTYKASKLSETIRSTAYTECVSVSTAGKATAYTGCGTVSKAGKDAAATATINGVRETPMLNITMTSSHNCSSGSVDPIQRKLELERKGKDRVSDKSKFQSQSQSEEGKKEGKKQVRGSTSTKRSRAAEVHNLSERKRRDRINEKMKALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMGPMMYPGIQQYMPSMGMRMGMGMGMGMGMSLGMEMGMNRPLMPFSNILPPSSPLPTTTTEATPYGPRFPMPPFHMPQPHVPAVPESSDNPLNSLGTLLPDQSRIPNTNFTDPYQQILTPHQVQQFMQGTNQQNVNRPGNSGGQDNPEKHRAG* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1496 544 Gene3D - 325 388 IPR036638 GO:0046983
Psa6g1496 544 MobiDBLite consensus disorder prediction 513 534 - -
Psa6g1496 544 MobiDBLite consensus disorder prediction 46 66 - -
Psa6g1496 544 MobiDBLite consensus disorder prediction 513 544 - -
Psa6g1496 544 CDD bHLH_AtPIF_like 330 393 - -
Psa6g1496 544 Pfam Helix-loop-helix DNA-binding domain 334 380 IPR011598 GO:0046983
Psa6g1496 544 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 328 395 IPR036638 GO:0046983
Psa6g1496 544 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 330 379 IPR011598 GO:0046983
Psa6g1496 544 SMART finulus 336 385 IPR011598 GO:0046983
Psa6g1496 544 MobiDBLite consensus disorder prediction 290 344 - -
Psa6g1496 544 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 543 IPR031066 -
Psa6g1496 544 Coils Coil 336 356 - -
Psa6g1496 544 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 543 - -
Psa6g1496 544 MobiDBLite consensus disorder prediction 290 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1496 Psa-Chr6 72899209 72905262 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1496 1 385 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 39.196 3.84e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa6g1496 HLH 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1496 - - mtr:MTR_1g069155 541.191