Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1488 ATGGCGCTATGGATGGAAAAGGGTTCGGAGCCCTTGACTGAAACCGAGAAAGCAGACCTTGAAGCCATTGCTGCAATCAAAGAGTCTTCAGCCTTTGAACTCAAGGAAAAGGGTAACCAATATGTGAAGATGGGGAAGAAGCATTACTCTGATGCTATTGATTGCTACACAAGGGCAATCAATCAGAAAGCCTTGAGTGATTCTGAGACCTCTATTCTTTTTTCAAATAGAGCCCTTGTGAATTTGCTTCTTGGGAATTTCAGACGAGCACTTAATGATGCTAATGATGCACTCAAGTTGTTGCCATCAAATATAAAGGCAATTTATAGAGCTGCCAAAGCTTCTCTTTCGTTGAATTTGTTGGATGAAGCACAAGACTATTGTCAAATGGGCCTTCATTTGGACCCCAATAATGAGGAATTGAAGAAGCTTGACAATCAGATTGGTATTAAGATATTGGAGAATGAAAAGCATGAAGCTGAAGTTTCTAAGGCTGTTGCAGATGCAAAGGAACTTGTTTCTGCAATGGAAAGTAGAGGCTTGAAAATTGGAAAGGCAATGTATCGAGAACTTACCGGGTTAAAGAAACCTGTGTTAGACAAAAGTAACATCCTTCATTGGCCTGTTCTTCTTCTGTATGCAGAGGTTATGTCCAGTGACTTCATTGAGGATTTCTGCGAGACTGACATGTTTTCTGATCACCTTGATATGGTTTTTGCAGAAGATCAGCCGCTTTCGTGGGATGTTGAAAATAATTACAAGCGTGAATTTATTGAGTTATACTATGATGCTGGTTCTGGACCTCGTCTATCTAAGGAAAAACTCCTTTGTTATCTATTAGAGGGAACTGCAGCAGCTTCTAATGGGGAAGGTAATGGTGATGAAGAGAAAGACGCGGTTGAGGATCTAAAGCAAAACACGGGCTCCCATAAATGGATCAAAGTAAATGAAAGGAGAACACTCTATGATGTTCTGAAAGAGTCTAAGTTCATTATTCCTGAGATCCCAGTCTTCTATGTTGTTTCTAAGAAATCAAGCTTTTATAGCAAATTCAAAGATGGAAAGTGGGCTCCTCCAAGTGTATGA 1086 0.4006 MALWMEKGSEPLTETEKADLEAIAAIKESSAFELKEKGNQYVKMGKKHYSDAIDCYTRAINQKALSDSETSILFSNRALVNLLLGNFRRALNDANDALKLLPSNIKAIYRAAKASLSLNLLDEAQDYCQMGLHLDPNNEELKKLDNQIGIKILENEKHEAEVSKAVADAKELVSAMESRGLKIGKAMYRELTGLKKPVLDKSNILHWPVLLLYAEVMSSDFIEDFCETDMFSDHLDMVFAEDQPLSWDVENNYKREFIELYYDAGSGPRLSKEKLLCYLLEGTAAASNGEGNGDEEKDAVEDLKQNTGSHKWIKVNERRTLYDVLKESKFIIPEIPVFYVVSKKSSFYSKFKDGKWAPPSV* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1488 361 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 357 - -
Psa6g1488 361 Gene3D Tetratricopeptide repeat domain 26 149 IPR011990 GO:0005515
Psa6g1488 361 Coils Coil 150 170 - -
Psa6g1488 361 SUPERFAMILY TPR-like 21 142 IPR011990 GO:0005515
Psa6g1488 361 SMART tpr_5 31 66 IPR019734 GO:0005515
Psa6g1488 361 SMART tpr_5 105 138 IPR019734 GO:0005515
Psa6g1488 361 SMART tpr_5 71 104 IPR019734 GO:0005515
Psa6g1488 361 Pfam Cns1/TTC4 Wheel domain 201 265 IPR044059 GO:0051879
Psa6g1488 361 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 1 357 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1488 30 160 Calmodulin-binding Proteins AT3G25230 31.690 2.03e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1488 K24927 - gmx:100783179 573.163