Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1456 ATGGCGCCCAATCCGAAAGTAGTAGCAGCCTATCGTGCAATGTCAAGTCTTGGGATTTCTGAATCACAAGTGAAACCAGTGTTAAAGAAACTTCTCAAATTATATGATAAAAATTGGGAACTTATTGAGGAAGGGAACTATAGAGCTCTTGCAGATGCTATATTTGAAGGCGATGTTTCTGAGGAGCCTGAACATCCAAAGAAAAACAAGAGAGTTAATGAAGAAGAGGCAGAGGCTGAAGAAGCTCTTATAAATGTTGAACCTGCTCAACCTTTGAAAAGATTGAGATTAAGAGGACAAGAGAACAATTCCCCTAGTTCAGCTCCTTCCCCGTCAAAGAAGCCTCACATTGAAAAGGCCACAGCACTTGAGGGAAGCTCTGCACAGAGGCATCAAAACAAAGCAGTGTCATCAGATGGAAACACGAGGATTGCAGCACGTCCAGGTCCAATGCAAGATGCTAGTTCTGACAGAGGAAAGCAACCTGCATTGCCTCAAGATTCTCTTAGAGGGAGAAAACCTATATATGAAACAACAGTTCAACCTGGAAGGCTTATGTTACCAAGCAACCAAATGCCTCATGCATTGATTGTACCTAAAGATGAGCCTGTTGATGAATTGCCTGATTATGAGCGTCCCATTGCAATGGTTCCTCCTGAACCTACAAGTTTAAGGCATTCATCAACGAAGAGTGGTATTAATAGAAAGCAAGGTGGCCATGTCTCTGAGACATCATCACAGCAGAAAAATGGAGTTAGAGATAAAGAAGTGGCTTCTGATGTTGTGATTGCCTCTTCAGCTCAGGGAGAAGTAAAACTTTCTCTGAGCTACAGCTCAGCTATTCAAGGTCCAGATTTTCGCATGCCTACTCAGGAACAGCTTCTAAAGATGATGGAGGATAGATGTCTGCGATCATATAAAATCACTGACCCTAATTTTTCTGTCGCGAAAATGTTTAGGGATATATGTGATTGCATGTTGGAATTCAGTACTGATTCAAATGATAACTCACAAGAAAGTTGTATGACAAGACCAACCATGGATGTGTTGAAGGAATCAGAGGCTAATGGCACTCCGGGTGTTGGGGGAAGTAAGGATTTGGACACGGGGTCTCACTCATCTAATGGATCAATCCAAGTTAATTCTTTTTCTGCCTTGGTTTCCCCTCGAGGCCCCTATTCGCCAGCCCATCAGAGCGCTTTGGATGATGCTGCAGTGATTTCCAAGATGGACATCTCAAAAGATATTCCACAAAGTGATGTTGGAATGCAGCCGGAGGATCCCGTGTCTCCAAATTCAAACAGTTTAGTAGTCGTTCCACGTCATCAGCTTACAGTAGATGATATAAGGTCTTTTCATGATGTTCATGACATTACAAAAGGTGAAGAGATTAATCAAATTCCGTGGGTGAATAAAACTACTAATGATTTCCCACCACCTTTCAACTACATACCCCAAAACCTTGTATTCCAAGATGCTTATGTTAACATTTCTCTATCACGTATTGGGGCCGAGGACAGTTGTCCCTGCATAGGAAGTTGTGTCTTGTTGTCAACACATTGTGCCTGTACAGATAAAACTGGGGGTGAATTTGCATATACTGCTCAAGGCCTGCTAAAGGAAGAATTTTTGGAAGAGTGCATTGCTATCAGTCACAACCCTCGACAACATTGCTTTTATTGCAAAGATTGCCCACTTGAAAGGTCCAAGAATAATGGTTATTTGGAACCATGTAAAGGACACTTAAAGAGAAAGTTTATTAAAGAATGCTGGAGAAAATGTGGCTGTGGGAAACAATGTGGCAATCGCCTTATTCAGCGAGGAATAACATGCAACTTGCAGGTATTTTTCACTTCAGAAGGAAAAGGATGGGGTCTTCGTACTTTAGAGGACCTGCCAAAAGGAGCATTTGTATGCGAGTTTGTTGGAGAGATTTTAACGATTAAAGAGTTGCATGAGAGGAACATAAAATGTGCTGAAAATGAGAAATCTACTTACCCAATTCTACTGGACACGGATTGGGATTCAGGGTTTGTGAAGGATGAAGAAGCTCTATGCTTAGAAGCAGCGTCCTTTGGCAACATTGCTAGGTTTATTAATCACAGATGTTCTGATGCAAACTTGGTTGAAATACCAATTCAAATTGAGTGTCCAGATCGCTATTACTATCATTTTGCCCTTTTCTCTTCCAGAAAAATAGCAGCACAAGAAGAACTCACTTGGGATTATGGCATTGACTTTGACGACCATGATCAACCTGTCAAACTGTTTGAGTGCAAATGTGGCAGTAAGTTCTGCAGGAATACGAAGCGATCAAACGGGTCCACTAGATCTACGTCAATTTCTGGGTGA 2352 0.4171 MAPNPKVVAAYRAMSSLGISESQVKPVLKKLLKLYDKNWELIEEGNYRALADAIFEGDVSEEPEHPKKNKRVNEEEAEAEEALINVEPAQPLKRLRLRGQENNSPSSAPSPSKKPHIEKATALEGSSAQRHQNKAVSSDGNTRIAARPGPMQDASSDRGKQPALPQDSLRGRKPIYETTVQPGRLMLPSNQMPHALIVPKDEPVDELPDYERPIAMVPPEPTSLRHSSTKSGINRKQGGHVSETSSQQKNGVRDKEVASDVVIASSAQGEVKLSLSYSSAIQGPDFRMPTQEQLLKMMEDRCLRSYKITDPNFSVAKMFRDICDCMLEFSTDSNDNSQESCMTRPTMDVLKESEANGTPGVGGSKDLDTGSHSSNGSIQVNSFSALVSPRGPYSPAHQSALDDAAVISKMDISKDIPQSDVGMQPEDPVSPNSNSLVVVPRHQLTVDDIRSFHDVHDITKGEEINQIPWVNKTTNDFPPPFNYIPQNLVFQDAYVNISLSRIGAEDSCPCIGSCVLLSTHCACTDKTGGEFAYTAQGLLKEEFLEECIAISHNPRQHCFYCKDCPLERSKNNGYLEPCKGHLKRKFIKECWRKCGCGKQCGNRLIQRGITCNLQVFFTSEGKGWGLRTLEDLPKGAFVCEFVGEILTIKELHERNIKCAENEKSTYPILLDTDWDSGFVKDEEALCLEAASFGNIARFINHRCSDANLVEIPIQIECPDRYYYHFALFSSRKIAAQEELTWDYGIDFDDHDQPVKLFECKCGSKFCRNTKRSNGSTRSTSISG* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1456 783 CDD SET_SETDB-like 479 744 - -
Psa6g1456 783 SMART set_7 611 750 IPR001214 GO:0005515
Psa6g1456 783 MobiDBLite consensus disorder prediction 221 254 - -
Psa6g1456 783 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 268 - -
Psa6g1456 783 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 338 780 - -
Psa6g1456 783 MobiDBLite consensus disorder prediction 222 248 - -
Psa6g1456 783 Gene3D - 1 59 IPR043017 -
Psa6g1456 783 MobiDBLite consensus disorder prediction 58 78 - -
Psa6g1456 783 MobiDBLite consensus disorder prediction 125 140 - -
Psa6g1456 783 Pfam Ubiquitin-binding WIYLD domain 6 56 IPR018848 GO:0018024
Psa6g1456 783 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 268 - -
Psa6g1456 783 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 338 780 - -
Psa6g1456 783 Gene3D SET domain 457 769 IPR046341 -
Psa6g1456 783 ProSiteProfiles SET domain profile. 611 744 IPR001214 GO:0005515
Psa6g1456 783 MobiDBLite consensus disorder prediction 123 174 - -
Psa6g1456 783 SUPERFAMILY SET domain 467 767 IPR046341 -
Psa6g1456 783 Pfam Pre-SET motif 458 603 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa6g1456 783 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 783 IPR025776 -
Psa6g1456 783 SMART preset_2 455 595 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa6g1456 783 Pfam SET domain 623 744 IPR001214 GO:0005515
Psa6g1456 783 ProSiteProfiles Pre-SET domain profile. 506 608 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Psa6g1456 783 MobiDBLite consensus disorder prediction 58 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1456 Psa-Chr6 70327060 70334549 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1456 587 744 C2H2 Transcription Factor Family AT2G23740 41.875 1.08e-27 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Psa6g1456 Pre-SET 7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1456 - - gmx:100778335 1023.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1456 6 70327060 70334549 Psa6g1456 6 70327060 70334549 ECH