Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1450 ATGTCTACGCTTTCTAAAGATGATAACTTGGCTCTTTCTTCTGAGGATTCTTCTAGCCCGGATGAGTCTGAGCTTGAATTGGGTCTTGGGTTGAGTCTTTCTCATCCTGCAAAGTCACACCAGTATCATCATCATCATGGTAACTATGCTAGGATTTTCACTGCTAAGGATTTTTCTTCTTCACCTTCCTCTGTTGGAACTAAGAGACCTGCTGATTCTCTTGATGCTACCAACCGTCCCAGTCAAGTAGTTGGATGGCCTCCCCTTCGAACATACCGAGTGAATAGCTTTAATGCCAACGTGAAATCAACTGAAGCATTTGACTCTGTTGCTGAGAAGAACAAGAACAATAATACTGGGGCAAGGAAGAGTACTGACAACGGAAAGGATGATAATAACATTAATGTCAAAGATAAAAGAAACCTCAGGAGTTCCCCCTTTGTCAAAGTAAATATGGATGGAATACCAATTGGAAGGAAGGTTGATTTGAGCGCTCACAGTTCCTACGAAACATTGGCAGAGACATTGGAGGACATGTTTGACGAATCAACCACAGGCGTCACTTGCAAAGGATCAGATGGCGAGGATCACAACATGACTATCAGAGGAGAAAAGCTTTCGATACTGTTGGATGGATCTTCCAAGTTTGTACTCACTTATGAAGACAAGGAAGGAGATTGGATGCTTGTTGGAGATGTTCCTTGGGGAATGTTCCTTAGTTCCGTGAAGAGGCTAAGAATCATGAGGACATCCGAGGCTAATGGACTTGCACCAAGATTGGAAGAAAAGAGCAGCAGACCGAAAAGCAAGCCTAAATAG 819 0.431 MSTLSKDDNLALSSEDSSSPDESELELGLGLSLSHPAKSHQYHHHHGNYARIFTAKDFSSSPSSVGTKRPADSLDATNRPSQVVGWPPLRTYRVNSFNANVKSTEAFDSVAEKNKNNNTGARKSTDNGKDDNNINVKDKRNLRSSPFVKVNMDGIPIGRKVDLSAHSSYETLAETLEDMFDESTTGVTCKGSDGEDHNMTIRGEKLSILLDGSSKFVLTYEDKEGDWMLVGDVPWGMFLSSVKRLRIMRTSEANGLAPRLEEKSSRPKSKPK* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1450 272 MobiDBLite consensus disorder prediction 108 135 - -
Psa6g1450 272 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 9 263 - -
Psa6g1450 272 Pfam AUX/IAA family 51 259 IPR033389 -
Psa6g1450 272 MobiDBLite consensus disorder prediction 108 123 - -
Psa6g1450 272 ProSiteProfiles PB1 domain profile. 145 252 IPR000270 GO:0005515
Psa6g1450 272 SUPERFAMILY CAD & PB1 domains 141 248 - -
Psa6g1450 272 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 263 IPR003311 GO:0005634|GO:0006355
Psa6g1450 272 MobiDBLite consensus disorder prediction 60 82 - -
Psa6g1450 272 Gene3D - 140 262 - -
Psa6g1450 272 MobiDBLite consensus disorder prediction 1 27 - -
Psa6g1450 272 MobiDBLite consensus disorder prediction 60 80 - -
Psa6g1450 272 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1450 Psa-Chr6 70074210 70076092 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1450 140 259 B3 DNA Binding Superfamily AT1G59750 34.167 5.94e-14 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Psa6g1450 AUX_IAA 1.3e-62 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1450 K14484 - gmx:100527033 354.369