Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1444 ATGGATCATGTGATTGGTGGCAAGTTTAAACTAGGAAGGAAAATTGGGAGTGGCTCTTTTGGAGAGCTCTATTTAGCTGTTAATATACAAAGTGGAGAGGAGGTGGCTGTTAAGCTGGAATCTGTGAAGACCAGACATCCACAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCCCACCTCAAATGGTTTGGAGTTGAGGGAGAGTACAATGTGATGGTTATCGATCTTCTTGGACCAAGTCTAGAAGATTTATTCAATTATTGTAACCGAAAATTTACATTGAAGTCAGTGTTGATGCTTGCTGATCAATTAATTAATAGAGTTGAATACATGCATTCACGAGGCTTTCTTCACCGTGACATAAAGCCAGACAATTTTCTGATGGGCCTCGGACGTAAAGCAAATCAAGTGTATGCCATTGACTACGGCCTTGCGAAAAAATATAGGGATCTTCAGACTCACAGGCACATACCGTACAGGGAAAACAAGAACCTTACAGGCACAGCACGCTACGCAAGTGTCAACACTCATCTTGGAATCGAGCAAAGCAGAAGGGATGATCTGGAGTCTCTTGGTTATGTGCTCATGTATTTCTTAAGAGGAAGTCTTCCTTGGCAGGGACTGAAGGCCGGAAACAAAAAACAAAAATATGATAAAATCAGTGAGACTAAGGTGTCAACTCCGATAGAGGTGCTCTGTAAAGCATATCCCTCTGAGTTTGTATCATACTTCCACTATTGCCGATCATTAAGGTTTGAGGACAAGCCCGATTATTCATATTTAAAGAGACTTTTCAGAGATCTATTTATTCGAGAAGGATATCAATTTGACTATGTTTTTGACTGGACTGTATTGAAATATCCACAAATCGGTAGCAGCTCTAGAGGACGGCATGGCAGTGGCAAGGCAGCTATGCAAGCAGCAGCTACACCTGCACGCAGACCAGAAAAGATCCCAGTTGTGAGAGAGATTCGAGAGAAGTTATCTGGGGCTGTTGAAGGATTCTCCCATAGAAACCGTCCAAGTTCTACTCCTCATCATCATCACGGTGAACATGTCAGACATAGGACTTATGACGAGGCAGCAATGTATAAGGAGATGCACTATGCCCAACACGATTCAATCGATACGGCAGCAATTCGAGAAGAGCAATGGTATCATCATCAAACATGA 1197 0.4244 MDHVIGGKFKLGRKIGSGSFGELYLAVNIQSGEEVAVKLESVKTRHPQLHYESKLYMLLQGGTGIPHLKWFGVEGEYNVMVIDLLGPSLEDLFNYCNRKFTLKSVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYAIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGNKKQKYDKISETKVSTPIEVLCKAYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTVLKYPQIGSSSRGRHGSGKAAMQAAATPARRPEKIPVVREIREKLSGAVEGFSHRNRPSSTPHHHHGEHVRHRTYDEAAMYKEMHYAQHDSIDTAAIREEQWYHHQT* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1444 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Psa6g1444 398 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1444 398 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 376 - -
Psa6g1444 398 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1444 398 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Psa6g1444 398 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Psa6g1444 398 Gene3D Transferase(Phosphotransferase) domain 1 1 336 - -
Psa6g1444 398 MobiDBLite consensus disorder prediction 342 362 - -
Psa6g1444 398 MobiDBLite consensus disorder prediction 303 324 - -
Psa6g1444 398 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1444 398 PANTHER CASEIN KINASE-RELATED 1 376 - -
Psa6g1444 398 CDD STKc_CK1_delta_epsilon 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1444 Psa-Chr6 69927010 69931246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1444 8 213 MAP Kinase Kinase Kinase AT3G06030 25.463 1.58e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Psa6g1444 Pkinase 6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1444 K08960 - gmx:100783824 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1444 6 69927010 69931246 Psa6g1444 6 69927010 69931246 ECH
Psa3g1322 3 118965968 118973826 Psa6g1444 6 69927010 69931246 PCT