Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1432 ATGAAGTTCCTACGCTCAGGGGACCAATTAGGGGCAACAGATGAAACCTACCCTTCCTCTCAATCTCTTATAACCAACGACTTCTTCTCAGCAAGCGGCCATTCTTTCCTACCTGGAAAACTTGATCTCAAACCGGACACCGGCAATATAGAAGAAGCAGAATTATCTTTGCGTGAAAGTGGTGTATTGAACTACGAGGAAGCTAGAGCTCTGTTAGGAAGATATGAGTATCAAAAGGGAAATTTAGTAGCTGCTTTACATGTCTTTGAGGGAATAGATGTTGCTGTTGTGACTCCTAAGATCAAAATTGCGCTTTCTAGAAATGGAGAACGACGGAAGAGACATTCTCATAATCACGGTGAACCGGAAATGTCTATACATTCTGTTGGATTATTGTTGGAAGCACTTTTCCTAAAAACTAAATCTTTGCAGGTTCTTGAAAGGTTTAAAGAAGCTGCTCAATCTTGCAAAGTTATTATGGACATAGTGGAATCTTCATTACCTGAAGGCTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACCGTGAGCAAGGCAGTCGAGCTGCTTCCGGAGTTGTGGAAGCTTGCTGATTGTTCGCGTGAAGCTACTTTGTCTTACCGGAGAGCACTCCTTCATCGATGGAATCTTGATGCAGGGACTACAGCAAAGATTCAAAAAGAATTTGTTGTTTTTCTTTTATATAGTGGAGGAGAAGTAATGCCCCCTAATCTTCGTTCCCAAATGGATGGCTCGTTTGTACCAGGAAACAACATAGAAGAGGCCATACTTCTTTTAATGATTTTGATAAGAAAAGTCTCTCTCAATAGAATTGAGTGGGATCCTTCAATTTTAGACCACCTTTCGTTTGCATTGTCTATTTCGGGAGGCCTGTCAAGGTTAGCCGATCATTTGGAAGAATTGCTCCCCGGGACTATTCATCGAAGTGAAAGATTCCATGATCTAGCTCTTTGTTATTATGGAGCAGATAAGGACTCAACGGCACTTGATCTTCTAAGAAAATTGTTGAATGGTAGAGAAAAGCCAAAACATGTTCCTGGTTTGTTAATGGCTTCTAAGATTTGTTGTGAGAATCCTACACTTGCAAAAGAAGGGGTAAGCTTCGCTCAGAGAGCGGTTGAGAGCTTGGATGGAAAATGTACGCAGTTAGAAAGTGTTGCGAAATTATATCTTGGTGTTTCATTATCAGCACACTCGAAATTAGCCGTTTCTGATTTTGAGAAGTTTAAGAGACAATCTGAGGCACTTCAAGCCTTGGAAACTGCTGGTAGAATGACCAGAATGATAGACCCGCTAGTACTTTACAATCTCAGCTTAGAATATGCAGAACAAAGGAAGTTGGATGACGCACTTTATTATGCAAAGTACGTCGTAAAACTGGAAGGTGGTTCTAATGTTAAAGGATGGCTACTATTAGCACGGATATTATCTGCTCAAAAACAGTTTTTGGATGCAGAATCTATTATTAACGCTGCTTTAGATCAGACTGGGAAATGGGATCAAGGTGATTTGTTGCGAACAAAAGCTAAAATTCAAATTGCACAGAACCAGTTAAAGAATGCCATCGAGACATACACTCAGCTTCTCGCTGTTCTTCAAATTCAGAGAAAGAGTTTTGGTTCTTGGAAGAAGTTATATAAGGACGACCGAGATCGTGCTAAGAACTTGGAATTGGAAATATGGCATGATCTTGCTCATGTGTATATCAGTCTTTCCCAATGGCATGATGCAGAGGCGTGTCTTTCAAAATCTAAGGCCATCAAACCATACTCTGCTTCTAGATGTCATGCTCTAGGTATAATGTATGAAGCAAAGGGCCTTTACAAAGAAGCTCTAAAAGCTTTTGGTGATGCTTTAAACATTGATCCTGGCCATGTTCTGAGCTTAATCTCCACTGCTAAAGTACTTAGACATTGCAGTAATAAATCAAATCCTGCAGTCAGAAGTTTTTTGATGGATGCACTACGACACGATAGATTGAATGCTTCTGCTTGGTATAATCTTGGCCTCTTTCACAAAGCTGAGGGTACAATATCATCATTGGTTGAAGCTGCAGAATGTTTTCAAGCAGCACAGTCTCTTGAAGAATCTACTCCACTTGAACCTTTCAGATGA 2142 0.4043 MKFLRSGDQLGATDETYPSSQSLITNDFFSASGHSFLPGKLDLKPDTGNIEEAELSLRESGVLNYEEARALLGRYEYQKGNLVAALHVFEGIDVAVVTPKIKIALSRNGERRKRHSHNHGEPEMSIHSVGLLLEALFLKTKSLQVLERFKEAAQSCKVIMDIVESSLPEGLPDNFGAECKLQETVSKAVELLPELWKLADCSREATLSYRRALLHRWNLDAGTTAKIQKEFVVFLLYSGGEVMPPNLRSQMDGSFVPGNNIEEAILLLMILIRKVSLNRIEWDPSILDHLSFALSISGGLSRLADHLEELLPGTIHRSERFHDLALCYYGADKDSTALDLLRKLLNGREKPKHVPGLLMASKICCENPTLAKEGVSFAQRAVESLDGKCTQLESVAKLYLGVSLSAHSKLAVSDFEKFKRQSEALQALETAGRMTRMIDPLVLYNLSLEYAEQRKLDDALYYAKYVVKLEGGSNVKGWLLLARILSAQKQFLDAESIINAALDQTGKWDQGDLLRTKAKIQIAQNQLKNAIETYTQLLAVLQIQRKSFGSWKKLYKDDRDRAKNLELEIWHDLAHVYISLSQWHDAEACLSKSKAIKPYSASRCHALGIMYEAKGLYKEALKAFGDALNIDPGHVLSLISTAKVLRHCSNKSNPAVRSFLMDALRHDRLNASAWYNLGLFHKAEGTISSLVEAAECFQAAQSLEESTPLEPFR* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1432 713 SMART tpr_5 475 508 IPR019734 GO:0005515
Psa6g1432 713 SMART tpr_5 511 544 IPR019734 GO:0005515
Psa6g1432 713 SMART tpr_5 567 600 IPR019734 GO:0005515
Psa6g1432 713 SMART tpr_5 601 634 IPR019734 GO:0005515
Psa6g1432 713 SMART tpr_5 671 707 IPR019734 GO:0005515
Psa6g1432 713 SMART tpr_5 440 473 IPR019734 GO:0005515
Psa6g1432 713 ProSiteProfiles TPR repeat profile. 601 634 IPR019734 GO:0005515
Psa6g1432 713 Gene3D Tetratricopeptide repeat domain 258 546 IPR011990 GO:0005515
Psa6g1432 713 Gene3D Tetratricopeptide repeat domain 547 709 IPR011990 GO:0005515
Psa6g1432 713 PANTHER PROTEIN NPGR2 1 713 - -
Psa6g1432 713 SUPERFAMILY TPR-like 417 540 IPR011990 GO:0005515
Psa6g1432 713 Pfam Tetratricopeptide repeat 602 633 IPR019734 GO:0005515
Psa6g1432 713 SUPERFAMILY TPR-like 512 685 IPR011990 GO:0005515
Psa6g1432 713 PANTHER PROTEIN NPG1 1 713 IPR043376 -
Psa6g1432 713 Coils Coil 513 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1432 Psa-Chr6 69494057 69497669 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1432 1 713 Calmodulin-binding Proteins AT4G28600 56.906 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1432 K21843 - gmx:100800762 1130.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1432 6 69494057 69497669 Psa6g1432 6 69494057 69497669 ECH
Psa6g1432 6 69494057 69497669 Psa3g1310 3 118033772 118039367 PCT