Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1425 ATGATTCATCATCCACACATGCATGAAACATGGGACTACACAATCATTACAAATGACTTATTATTGCCACCTCCAATCCAAACAAATCCTTATCCAAAACCACTAACCGAAAACCACTCCTTAAACTTAGCACAAAATAATGAGATATGTGATTGGGTTGAACACATTACTAAACACTTTGTTGAAGATCACATACAACAAAGCTCTTCTGATAATCATAGTATTCATAATCTTCACACTCAAACAAACACCTCAGACTTAGTTCATAATCATAACCATAATAGTAATGATTCTGAATGTGATCAAGGGTTGAATTTGATAACCCTTTTAATGGAATGTGCAGTGGCAATTTCAGTTGAAAATCTTGGTGAAGCCCATAGAATGTTACTAGAGTTAACACAATTAGCTTCACCTTATAAAACATCATGTGCTGAGCGTGTTGTTGCTTATTTTGCAAAGGCAATGATAAGTAGAGTCATGAATTCATGGCTTGGACTTTGTTCTCCTTTGATTGATCATAGAACCATTCACTCTGCACTCCAAGTCTTCAACAATATTTCCCCTTTCATCAAGTTTTCACATTTTACTTCAAACCAAGCGATTCTCGAAGCGGTGAATCGTTGTGAGAAAATTCATATACTTGATTTGGATATCATGCAAGGTCTTCAATGGCCGGCTTTTTTTCACATACTCGCGACTCGGATGGAGGGTCGACCTACGGTTCGAATGACGGGGATGGGAGCGTCGATGGAGCTTCTTATTGAGACGGGGAAAAATCTCTCGAATTTCGCGAGAAGGCTTGGTTTGTCTTTGGAGTTTTACCCTCTAGCATGTAAATTTGGTGAAGTTGTTGATGTTTCCATGTTGCAAATTAGGCCTAATGAGACACTTGCAGTGCATTGGTTGCAACATTCTTTGTATGACTCAACTGGACCTGATTGGAAAACTTTGAGACTTCTTGAGGAGTTGGAACCAAGAATCATAACTTTGGTAGAACAAGATGTTAACATTGGAGGCTCATTCTTGGACCGTTTTGTCGGTTCGTTACATTACTATTCTACACTTTTTGATTCTCTAGGATCATATTTGCATAGTGATGATTCTAACAGGAACATTGTTGAACATGATCTTCTATCTAAAGAGATTAACAATATATTGGCCATAGGAGGACCTAAGAGGAGTGGTGAAGAAAAGTTTAGGCTTTGGAGAAGTGAACTTGTAGGAAGAAATAGTTTTGAGCAAGTTCCAATGAGTGGTAATTCAATGGCTCAAGCACAGTTGATATTGAACATGTTTTCACCAGCTCATGGTTATAGTGTTGCTCAAGTTGATGGCATGTTAAGGCTTGGTTGGAAGGATACTAGTTTGTATACAGCTTCTTCGTGGACTTGTAGAGATTCTAGGTAG 1407 0.3824 MIHHPHMHETWDYTIITNDLLLPPPIQTNPYPKPLTENHSLNLAQNNEICDWVEHITKHFVEDHIQQSSSDNHSIHNLHTQTNTSDLVHNHNHNSNDSECDQGLNLITLLMECAVAISVENLGEAHRMLLELTQLASPYKTSCAERVVAYFAKAMISRVMNSWLGLCSPLIDHRTIHSALQVFNNISPFIKFSHFTSNQAILEAVNRCEKIHILDLDIMQGLQWPAFFHILATRMEGRPTVRMTGMGASMELLIETGKNLSNFARRLGLSLEFYPLACKFGEVVDVSMLQIRPNETLAVHWLQHSLYDSTGPDWKTLRLLEELEPRIITLVEQDVNIGGSFLDRFVGSLHYYSTLFDSLGSYLHSDDSNRNIVEHDLLSKEINNILAIGGPKRSGEEKFRLWRSELVGRNSFEQVPMSGNSMAQAQLILNMFSPAHGYSVAQVDGMLRLGWKDTSLYTASSWTCRDSR* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1425 468 Pfam GRAS domain family 106 463 IPR005202 -
Psa6g1425 468 ProSiteProfiles GRAS family profile. 97 463 IPR005202 -
Psa6g1425 468 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 11 464 IPR005202 -
Psa6g1425 468 PANTHER OS05G0485400 PROTEIN 11 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1425 Psa-Chr6 69164490 69166410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1425 81 465 GRAS Transcription Factor Family AT3G54220 52.672 8.83e-133 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Psa6g1425 GRAS 1.1e-101 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1425 - - cam:101494668 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1425 6 69164490 69166410 Psa6g1425 6 69164490 69166410 ECH