Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1421 ATGGAAGAAGAACAGGATCGAATTCTGCTTACTACTTTGGGCGTTAAATCTGCCAATCCTGAAGACATCGAACGCCGGGTTTTGGAAAAGGCTGGGAATGGTACAGTAAATGTTACTGAAGCTGAAGGGAACACTGAGGAAAACCAATGTTCTACTTTACCTGAAACCCTTGATCCGTTAACTACTGCTAAAGCTGAACTTCATCAGAAGTTGAGGGCAATTGAATTTGAAATTGGTGCAGTTTCTTCCACTATTCAACGGCCGAGAGATGTTGATAAGGATGGAGAAGGCGTTGATGTTGACGAGGAGAATTTGGAGGAAGGGGATGATGAGGGGAATGGTTCTGAACTTCAGCGTGTTCTTGCGGCTGATAGGCTGAGAAGTCTTGAGAAAACGAAGGCGCAACTTGAGAAAGAGCTTTCTAGATTTTCTAAGGATAGTGATCCGAAAAGCATTGAGCGGAAAAAGGTCATATTTAGTTTAGTTAAGGAAGATCGAAGACCAAAGAAGAAGCTTAAAGATGATAAGAAATTAAGCAAAAGACCTGTGAAGCGGTTTAAGACGGTCTCGTTTGATGATGATGCTGATTTTGATGCTGTGCTGGATGCAGCCTCTACGGGCTTTGTAGAAACTGAAAGGGATGAATTGGTTAGAAAAGGAATTTTCACCCCTTTTCATAAGTTGAAGGGCTTTGAGCGCCGCATTCAACAACCTGAAGCATTAACTAGTCATAATGCTGCTGAGCAGGAAAATGGCGACCATCTTGTTTTGTCCAGTGTTGAAAGAGCTGCCAGATCATTTTCTCAGGCAGCAAGAGCTCGGCCAACTTCCAAGCTGCTTGAGCCTGGAGAGTTACCGAAGCTTGATGCACCCGCTGTTCCTTTTCGCAGACTCAAGAAACCACTACAATTGCCCAAACCTCCAGACGGTGAGGGGGATCAGAATACAGATTCAAAAAAGAAAAAGAGGCGACCTTTGCCTGGTAGGAAATGGACCAAACGCGTCTCTTCTGAGGATAGACAACCGGAAGAAAGTGAAAATGCAAATGGTTGCTTGGACACTTCCAGTTGTGAAAGTTTAGAAGGCCATGATGTTGAACTTTCTGAACACGAATCTTCTTATGTAACATTAGAAGGTGGGCTGAAAATTCCTGAGAACATATTTGAAGCTCTGTTTGACTATCAAAAGGTTGGTGTTCAATGGCTGTGGGAGCTGCACTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGTCTTGGGAAAACCATACAAGTATTATCATTTCTGGGTGCATTGCATTTTAGTGGCATGTATAAACCCAGCATTATTGTCTGTCCTGTTACACTCCTGCGACAATGGAAAAGGGAAGCAAAAAAGTGGTATCCTAAATTCCATGTAGAACTTGTACACGATTCTGCTCATGATCTGGCTTCTGAAAAGAAGCGAGCTGGCTCCGATGGAACCGACTCTGAAAGCAATAGTTCAAGCGACAATGATTATGAGAGAAGTGTACCGTCTAGAAACCCAAGAAAGTGGGAAACCCTGATAAACCGTGTCATGAGATCAGAATCTGGATTACTCATCACCACTTATGAGCAGCTAAGGATACTGGGGGACCAGTTGCTTGACTTTGAATGGGGTTATGCAGTTCTTGATGAAGGGCATAAAATAAAGAATCCAAATGCAGAAGTTACCCTAGCTTGCAAACAGCTACAAACTGTACACCGCATCATTATGACTGGTGCACCTATTCAGAACAAACTGAGTGAGTTATGGTCGTTGTTTGATTTTGTTTTCCCTGGAAAATTGGGTGTTTTGCCTGTATTTGAAGCTGAGTTTGCAGTTCCTATAGCAGTTGGCGGATATTCAAATGCCTCTCCATTACAAGTATCCACAGCATACAGGTGTGCTGTTGTGCTGCGTGATTTAATTATGCCGTATCTTCTCCGACGAATGAAGGCCGATGTAAATGCCCAACTTCCTAAGAAAACTGAGCATGTTCTGTTTTGCAGCCTTACATCAGAGCAAGTATCTGCTTATAGAGCATTTTTAGCCAGCACAGAAGTGGAGGAAATATTGGATGGAGGCAGGAATTCGCTTTATGGAATTGATGTGATGCGCAAGATCTGCAACCACCCAGACCTACTTGAAAGGGAACATGCCTTCAGCGATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAAGTTGTAGCTCAAGTGCTCAATGTTTGGAAGGAGCAGGGTCACCGCGTTCTTCTTTTTACTCAAACCCAACAAATGCTTGACATTTTTGAGAAATATTTGACCACTTCTGGTCATATTTACCGGAGAATGGACGGTCTCACTCCTGTAAAACATAGAATGGCTTTAATGGACGAGTTTAATGCCTCAAGTGATATTTTTGTTTTCATTTTAACAACTAAAGTTGGGGGGTTGGGGACAAATCTTACTGGTGCAGATAGGGTGATCATCTTTGATCCTGATTGGAATCCTTCAACTGATATGCAGGCTAGAGAGCGTGCATGGAGAATTGGTCAGAAACGGGATGTGACAATATATAGGTTAATAACACGTGGAACTATAGAGGAGAAAGTGTATCATCGTCAGATTTACAAACATTTTCTTACCAATAAGATCTTGAAGAACCCACAGCAGAAAAGGTTCTTCAAAGCCCGAGATATGAAAGATCTTTTTGTATTGAATGTGAACGAAGAAACTGGTTCAACAGAAACGTCAAATATTTTTGGTCAAATAGCTGAAGATGTAAACATTATTGGGACACATCAAGATTCTCAGGATAATGAATCTAGTCATACTGCTGAATTGGGTTCCGAAGATGCTGCAGTTGGTAATGATGGCAAATCACACGGAGGATCTTCAAGAGGAAAAGGGAAAGAGAAGGTTGACAAAAACGGAGTTGGTGAAGAAGCGAATATATTGAAAAGTCTTTTTGATGCTAATGGGATACATAGTGCCATGAATCATGATTTGATCATGGATGCCCATGATGAGGAGAAGATGAGACTTGACGAACAAGCTTCACAGGTTGCACAAAGAGCGGCAGAAGCTTTACGTAAGTCACGAATGATTCGAAGCAACGAAAGCGTCTCTGTTCCTACATGGACCGGAAGGTCAGGAGCTGCTGGTGCACCATCATCTGTTCGGCGGAAGTTTGGTTCAACTGTGAATCCCCAGTTGCTAAATAATAGCAAAGCATCTAATGAATCACCTAGCAGCGGATCTAACAAATTCAATGGATATGCTGCTGGGGCGTCTTCTGGTAAGGCATTATCTTCTGCTGAAATATTATCTAAAATTCGAGGTAATCAAGAAAAAGCCGCCAGTGTTGGGCTTGAGCATCAGTTTGGTATGTCGTCAACTTCCACGAATCAGTCAAGAGATGTTAGAACATCCAGGGCACCTGAAAATCCATCTGGGTTCCAACCTGAAGTAATGATTCGAAAAATCTGCACCTTTTTCCAACAGAAAGGTGGCAGCTGTAGTTCATCCAGCATAGTTCAGTATTTCAAGGACAGAATCCCGTCAAAAGATCTTGCCCTGTTCAAAAATATGTTAAAGGAAATAGCGACTCTGCAGAAAAGATCAAATGGTTCCTATTGGGTTTTGAGGCCAGACTATCAAGAATAG 3657 0.4238 MEEEQDRILLTTLGVKSANPEDIERRVLEKAGNGTVNVTEAEGNTEENQCSTLPETLDPLTTAKAELHQKLRAIEFEIGAVSSTIQRPRDVDKDGEGVDVDEENLEEGDDEGNGSELQRVLAADRLRSLEKTKAQLEKELSRFSKDSDPKSIERKKVIFSLVKEDRRPKKKLKDDKKLSKRPVKRFKTVSFDDDADFDAVLDAASTGFVETERDELVRKGIFTPFHKLKGFERRIQQPEALTSHNAAEQENGDHLVLSSVERAARSFSQAARARPTSKLLEPGELPKLDAPAVPFRRLKKPLQLPKPPDGEGDQNTDSKKKKRRPLPGRKWTKRVSSEDRQPEESENANGCLDTSSCESLEGHDVELSEHESSYVTLEGGLKIPENIFEALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSGMYKPSIIVCPVTLLRQWKREAKKWYPKFHVELVHDSAHDLASEKKRAGSDGTDSESNSSSDNDYERSVPSRNPRKWETLINRVMRSESGLLITTYEQLRILGDQLLDFEWGYAVLDEGHKIKNPNAEVTLACKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIAVGGYSNASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTSEQVSAYRAFLASTEVEEILDGGRNSLYGIDVMRKICNHPDLLEREHAFSDPDYGNPERSGKMKVVAQVLNVWKEQGHRVLLFTQTQQMLDIFEKYLTTSGHIYRRMDGLTPVKHRMALMDEFNASSDIFVFILTTKVGGLGTNLTGADRVIIFDPDWNPSTDMQARERAWRIGQKRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFVLNVNEETGSTETSNIFGQIAEDVNIIGTHQDSQDNESSHTAELGSEDAAVGNDGKSHGGSSRGKGKEKVDKNGVGEEANILKSLFDANGIHSAMNHDLIMDAHDEEKMRLDEQASQVAQRAAEALRKSRMIRSNESVSVPTWTGRSGAAGAPSSVRRKFGSTVNPQLLNNSKASNESPSSGSNKFNGYAAGASSGKALSSAEILSKIRGNQEKAASVGLEHQFGMSSTSTNQSRDVRTSRAPENPSGFQPEVMIRKICTFFQQKGGSCSSSSIVQYFKDRIPSKDLALFKNMLKEIATLQKRSNGSYWVLRPDYQE* 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1421 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 652 IPR027417 -
Psa6g1421 1218 CDD DEXHc_ERCC6 391 601 - -
Psa6g1421 1218 MobiDBLite consensus disorder prediction 1124 1147 - -
Psa6g1421 1218 MobiDBLite consensus disorder prediction 1059 1083 - -
Psa6g1421 1218 MobiDBLite consensus disorder prediction 961 976 - -
Psa6g1421 1218 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 259 1116 - -
Psa6g1421 1218 MobiDBLite consensus disorder prediction 1038 1083 - -
Psa6g1421 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 654 905 IPR027417 -
Psa6g1421 1218 Pfam SNF2-related domain 394 716 IPR000330 GO:0005524|GO:0140658
Psa6g1421 1218 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 403 602 IPR014001 -
Psa6g1421 1218 Gene3D - 658 946 IPR027417 -
Psa6g1421 1218 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 739 898 IPR001650 -
Psa6g1421 1218 MobiDBLite consensus disorder prediction 302 321 - -
Psa6g1421 1218 SMART ultradead3 387 610 IPR014001 -
Psa6g1421 1218 MobiDBLite consensus disorder prediction 331 346 - -
Psa6g1421 1218 MobiDBLite consensus disorder prediction 267 355 - -
Psa6g1421 1218 MobiDBLite consensus disorder prediction 478 507 - -
Psa6g1421 1218 Gene3D - 363 651 IPR038718 -
Psa6g1421 1218 MobiDBLite consensus disorder prediction 932 976 - -
Psa6g1421 1218 Pfam Helicase conserved C-terminal domain 741 848 IPR001650 -
Psa6g1421 1218 MobiDBLite consensus disorder prediction 84 116 - -
Psa6g1421 1218 MobiDBLite consensus disorder prediction 489 503 - -
Psa6g1421 1218 SMART helicmild6 765 848 IPR001650 -
Psa6g1421 1218 Coils Coil 119 146 - -
Psa6g1421 1218 MobiDBLite consensus disorder prediction 96 111 - -
Psa6g1421 1218 CDD SF2_C_SNF 734 859 - -
Psa6g1421 1218 PANTHER SNF2/RAD54 FAMILY MEMBER 259 1116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1421 Psa-Chr6 69060685 69071807 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1421 384 901 RAD5 or RAD16-like Gene Family AT1G02670 24.080 1.13e-25 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Psa6g1421 SNF2_N 2.1e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1421 K10841 - gmx:100820025 1871.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1421 6 69060685 69071807 Psa6g1421 6 69060685 69071807 ECH