Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1413 ATGAGCCTCTCAATGTTCATGTGCAGATTAATCACAAAACCTTTAATAAGCAATGTTCCATGCAATGGCAAAAAACTCAACACGAGACAAATTCAAAAAGAGAATGTAGTTTTGGTGATGGGAGCAACAGCCACAGGAAAATCAAAGCTATCAATTGACTTAGCAAACTATTTTCCATCCGAAATAATCAACTCCGACAAAATTCAAATCTACGAAGGTCTCGACATCGTAACAAACAAAATAACAAAAGAAGAACAAAAAGGAATACCTCATCATTTACTAGGAACACACAACCCCAACATAGAGTTCACATCGAACGATTTTCGCGAAAAATCAACCTCGGCCATTGACTCAATCACGGGCCACGGACATCTTCCCATCATCGTCGGAGGCTCGAATTCATATCTCGAAGCCTTAATCGACGATGATGACTATAATTTTCGATCCAGATACAACTTCTGTTGTCTCTGGGTCGATGTTTCAATGCCTATTCTCCGCGCGTACATAGAACAACGCGTGGATCAAATGTTTAACAGTGGAATGATCAACGAGCTGCGACCGTTTTATAATCCCACCGGGGATTATTCAAAAGGGATACGAAAAGCCATTGGTGTTCCCGAGTTCGATGACTATTTTCGAATGGAGAGTTTCGTGGACGAAAAAACGAGGAAACAATTACTCGAAAAAGCAGTGAATGAGATGAAGATAAACACATGGAAATTAGCTAGGAAACAGCTTGGGAAGATTGATTTTCTGAAGAATGTTAAGAGATGGGAGATTCATCGATTAGATGCTACACCTGTTTTTAGGAAGCGTGGAAAAGAAGCTAATGAAACATGGAAGAAGATTGTTGCAGAGCCTAGTGCTATGATTGTGGCAAACTTTTTGTATAACTCTGCTAATGTTGTGAATTCTTCTTCTTCTTCATCATCGAATCTTAGAGTGCCAAAATCTCAGAGTGATCTTATGGCTGCTGCTACATGTTAG 987 0.3972 MSLSMFMCRLITKPLISNVPCNGKKLNTRQIQKENVVLVMGATATGKSKLSIDLANYFPSEIINSDKIQIYEGLDIVTNKITKEEQKGIPHHLLGTHNPNIEFTSNDFREKSTSAIDSITGHGHLPIIVGGSNSYLEALIDDDDYNFRSRYNFCCLWVDVSMPILRAYIEQRVDQMFNSGMINELRPFYNPTGDYSKGIRKAIGVPEFDDYFRMESFVDEKTRKQLLEKAVNEMKINTWKLARKQLGKIDFLKNVKRWEIHRLDATPVFRKRGKEANETWKKIVAEPSAMIVANFLYNSANVVNSSSSSSSNLRVPKSQSDLMAAATC* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1413 328 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 26 301 IPR039657 -
Psa6g1413 328 Gene3D - 33 296 IPR027417 -
Psa6g1413 328 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 151 IPR027417 -
Psa6g1413 328 Pfam IPP transferase 69 142 - -
Psa6g1413 328 Pfam IPP transferase 148 246 - -
Psa6g1413 328 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 162 260 - -
Psa6g1413 328 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 26 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1413 Psa-Chr6 68693010 68694559 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1413 149 296 C2H2 Transcription Factor Family AT2G27760 30.857 1.26e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1413 K10760 - gmx:100803964 439.113
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1413 6 68693010 68694559 Psa6g1413 6 68693010 68694559 ECH