Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1403 ATGACTGCTCCAACTCCGGAAAACGGTTGTAATAAGCTTCAAAACATGTTGCAGGCTGCAGTGCAATCGGTTCAATGGACTTATAGCCTCTTCTGGCAAATTTGCCCACAACAATTGATACTGGTTTGGGGCGATGGATATTACAACGGAGCAATTAAGACACGAAAGACAGTGCAACCAATGGAGGTTAGTGCAGAAGAAGCTTCTCTACAAAGAAGCCAGCAACTAAGAGAGCTGTATGAATCGTTATCGGCCGGAGAGACAAATCCGCCAACGCGTCGACCGTGTGCTTCTTTGTCGCCTGAAGACTTAACAGAATCTGAATGGTTTTATTTGATGTGTGTCTCTTTCTCATTTCCTCCTGGTGTCGGGTTGCCAGGAAAGGCATATGCTAGGAGGCAACATGTATGGCTCACGGGTGCAAATGAGGTGGATAGCAAAACATTTTCAAGAGCTATTTTAGCCAAGAGTGCTAATATACAGACTGTGGTATGCATTCCTGTGTTGGATGGTGTCGTTGAGATTGGCACAACTGATAAGGTTCAAGAAGATCTTAATTTCATCAAACACGTGAGGAGTTTCTTCATAGACCACCACTCTTTGCCACCAAAGCCAGCACTCTCTGAACACTCAACCTCCAATCCGACTTACTCAACCGATCACATTCCTGCCATTATGTACACAGTGGCAGACCCAGCCTCCACGACAATTCCCAATCAAGACGATATGGATGAAGATGAGGAAGAGGATGACGAAGATGACGAAGTTGAATCTGGATCTGAAGATGAAACCAACCAAGGTCATAACCAACACGCAACCTCTATAATAGAGGCTGCGGAACCGAGTGAACTCATGCAAATTGAAATGCCCGATGATATTCGGATCGGGTCACCCAACGATGGGTCGAATAATTTGGACTCGGATTTTCATTTGTTGGCCGTTAGTAATCAAGGAAACCCATCAAGACAAATTGACTCATATACAACCGAGAGATGGGGTCCAATCGAAGAACCTCTCGATGATTCACTACAAGTTCAATTATCATCTTCAGATAAATCGGTAATTAACAAATTTAAATTTCAAATATGTTTTGAATCCTTGTATTTAGTACTTCATCATCCATTAGAAGACTTAACACAAGAAGACACACACTACTCTCAAACAGTAACCACCATTCTCCAAAACCAATGGATCGATTCACCTTCCATCAACTACATCAACTACTCCACCCAATCATCTTTCACCACCTGGACCAACCACCACTTCCACCCGCCGCCGCCGCCGGACCCTGCCACCTCCCAGTGGCTCCTCAAATACATCCTCTTCACCGTCCCATACCTCCACACCAAGAACCACGACGAAACCTCTCCACAAACACGCGACACCGCCGGAGTCAACAGCAACGATCCATCCGCCAGGCTACGCGGCAAGGGAACTCCCCAAGACGAACTCAGCGCGAACCATGTCCTCGCTGAGCGACGGAGGAGAGAGAAACTCAACGAGAGGTTCATAATTCTAAGATCATTGGTTCCTTTTGTTACGAAGATGGATAAAGCTTCTATCTTAGGCGACACGATCGAGTATTTGAAACAGCTTCGGAGAAAGATTCAAGATCTCGAGACACGTAACCGTCAGATGGAGTCCGAGAAAAGTGGAGTAACCGTTTTGGTGGGTCCCACTGAGAAGAAAAAAGTGAGGATTGTGGAAGGGAATGGCACTGGTGGGGGCGTTAGAGCGAAAGCAGTTGAGGTTGTTGCGTCGGTTCAGGTTTCGATTATAGAGAGTGATGCTTTGTTGGAGATTGAATGTTTACAAAGAGAAGGGTTGTTGTTGGATGTTATGATGATGTTGAGAGAGTTGAGAATTGAGGTTATTGGAGTTCAATCTTCGCTCAACAATGGCGTTTTCGTCGCGGAATTGAGGGCTAAGGTTAAGGAAAATGGTAATGGGAAGAAAGTTAGTATTGTGGAAGTTAAGAGAGCGCTTAACCAAATTATACCTCATAATAATATTTAG 2016 0.4499 MTAPTPENGCNKLQNMLQAAVQSVQWTYSLFWQICPQQLILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCASLSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHVWLTGANEVDSKTFSRAILAKSANIQTVVCIPVLDGVVEIGTTDKVQEDLNFIKHVRSFFIDHHSLPPKPALSEHSTSNPTYSTDHIPAIMYTVADPASTTIPNQDDMDEDEEEDDEDDEVESGSEDETNQGHNQHATSIIEAAEPSELMQIEMPDDIRIGSPNDGSNNLDSDFHLLAVSNQGNPSRQIDSYTTERWGPIEEPLDDSLQVQLSSSDKSVINKFKFQICFESLYLVLHHPLEDLTQEDTHYSQTVTTILQNQWIDSPSINYINYSTQSSFTTWTNHHFHPPPPPDPATSQWLLKYILFTVPYLHTKNHDETSPQTRDTAGVNSNDPSARLRGKGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYLKQLRRKIQDLETRNRQMESEKSGVTVLVGPTEKKKVRIVEGNGTGGGVRAKAVEVVASVQVSIIESDALLEIECLQREGLLLDVMMMLRELRIEVIGVQSSLNNGVFVAELRAKVKENGNGKKVSIVEVKRALNQIIPHNNI* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1403 671 Pfam Helix-loop-helix DNA-binding domain 486 533 IPR011598 GO:0046983
Psa6g1403 671 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 485 551 IPR036638 GO:0046983
Psa6g1403 671 MobiDBLite consensus disorder prediction 230 271 - -
Psa6g1403 671 SMART finulus 489 538 IPR011598 GO:0046983
Psa6g1403 671 MobiDBLite consensus disorder prediction 240 260 - -
Psa6g1403 671 PANTHER TRANSCRIPTION FACTOR TT8 12 668 - -
Psa6g1403 671 MobiDBLite consensus disorder prediction 458 474 - -
Psa6g1403 671 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 13 195 IPR025610 -
Psa6g1403 671 PANTHER TRANSCRIPTION FACTOR TT8 12 668 - -
Psa6g1403 671 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 483 532 IPR011598 GO:0046983
Psa6g1403 671 Gene3D - 484 553 IPR036638 GO:0046983
Psa6g1403 671 Coils Coil 522 549 - -
Psa6g1403 671 MobiDBLite consensus disorder prediction 451 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1403 Psa-Chr6 68330158 68340923 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1403 372 669 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 41.391 4.12e-55 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Psa6g1403 bHLH-MYC_N 2.4e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1403 - - cam:101506726 867.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1403 6 68330158 68340923 Psa6g1403 6 68330158 68340923 ECH