Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1376 ATGGAACAGTATGAAGTTCTAGAACAGATTGGTAAGGGCTCTTTTGCTTCTGCTCTTCTTGTAAGACACAAGCATGAAAACAAAAGGTATGTGCTCAAGAAGATCCGCCTTGCTCGTCAGACTGAAAGAATCCGTAGATCTGCTCACCAGGAGATGGAGCTTATTTCTAAAGTTCGTAATCCATTCATTGTAGACTATAAAGATTCATGGGTAGAAAAGGGTTGTTTTGTATGTATTGTCATTGGCTATTGTGAAGGAGGAGATATGGCTGAAGCTATTAAAAAGGCTAATTGTGTTCATTTTTCTGAAGAGAGGCTTTGCAAGTGGCTAGTTCAACTCTTGATGGCACTTGATTACTTGCATACAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGACAAGTGATGATCTTGCTTCTTCGATTGTGGGGACTCCGAGTTATATGTGCCCCGAGCTTCTTGCTGATATACCGTATGGATCTAAGTCAGATATCTGGTCTTTGGGATGCTGTGTATATGAAATGGCTGCGCACAAACCAGCTTTTAAAGCTCTCGATATGCAAGCACTAATTAACAAAATAAACAAGTCGTTAGTGTCCCCACTACCAACAGTTTATTCTGGTACTTTTCGAGGCATGGTGAAGAGTATGCTACGGAAAAATCCCGAGCATAGGCCAAGTGCTGCGGAGCTACTAAATCATCCACATCTTCAACCTTATATACTTAAAGTTCATCTGAAGCTAAACAACCCCAGAAGAAGTACTTTTCCATTCCAATGGACCGACTCGAACCATGCTAGGAGAAGTCGATTTGTAGAACCGGAATCTGTTTCCACTTTCTCTGGCAGAGTTAAACGATTGTCATTCAGTAATGACAGGGCCTTGAATCCTAGTATTTCTGGAACTGAAGTAGGTTCTCTGTGTTCTACTCAAAGAGCTCAAGGATTCTCTACTTATTCAAAACATTATGAGCTATCCATTGGCTGTGTCCGTGAAGAACAGAATGCTAACAAATCAAAAGACACCAAGTTCTCAATTGTTCGTCAAATGGAAAGGAGAGCAGCTAAGGAGTCTGCCACCCCCCGGCGACAGATTACCCCATCAAAGATAGCCCATACTAGTTCCAAGCGCGATTCCCTTCCATCATCTTCTACTCCAGCTGGTAAATTTACCCCACCGTCTCGCAGAGCTTCCCTTCCATTGCCTACAAGATCCACAGCCACGACCACTCCTTACAGAGCGAATGTTGATCTTCTTCGAAATGTGGACTCTCCTAATATTTCTGTGAATGCGCCACGAATTGACAAGATTGCCGAGTTTTCTTTGGCCCCTGGTGAGGATCATCCTCTCTTCCCTGTGCCCGGAACATCATCAACATCAGCTCAATGCTCTTCTAGTTCCCCAAGGAGCGCTGCTGACTACACAATCACAAAAGACAAGTGTACAATCCAGATTGTGGGCAAAGCCAATGTCCCTACCAGTGGTGCTCTAGTTTCGTGTGGCAATGAATGCTATGAACATGTCACAACTGCTGTTTCAAGCAATTCATCGACAGATTCTCGTCAACGCAAGTTTGACACCTCGTCTTACGAGCAACGAGCGGAGGCATTAGAAGGGTTGCTCGAGTTCAGTGCCCGGCTTCTACAACAACAGAGGTTTGAAGAGCTGGAGGTGTTGTTGAAGCCATTTGGACCTGAGAAGGTTTCTCCAAGGGAAACAGCCATTTGGTTGACTAAGAGCTTTAAAGAAACTGTGGTCTAA 1824 0.4337 MEQYEVLEQIGKGSFASALLVRHKHENKRYVLKKIRLARQTERIRRSAHQEMELISKVRNPFIVDYKDSWVEKGCFVCIVIGYCEGGDMAEAIKKANCVHFSEERLCKWLVQLLMALDYLHTNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSIVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVSPLPTVYSGTFRGMVKSMLRKNPEHRPSAAELLNHPHLQPYILKVHLKLNNPRRSTFPFQWTDSNHARRSRFVEPESVSTFSGRVKRLSFSNDRALNPSISGTEVGSLCSTQRAQGFSTYSKHYELSIGCVREEQNANKSKDTKFSIVRQMERRAAKESATPRRQITPSKIAHTSSKRDSLPSSSTPAGKFTPPSRRASLPLPTRSTATTTPYRANVDLLRNVDSPNISVNAPRIDKIAEFSLAPGEDHPLFPVPGTSSTSAQCSSSSPRSAADYTITKDKCTIQIVGKANVPTSGALVSCGNECYEHVTTAVSSNSSTDSRQRKFDTSSYEQRAEALEGLLEFSARLLQQQRFEELEVLLKPFGPEKVSPRETAIWLTKSFKETVV* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1376 607 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Psa6g1376 607 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1376 607 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1376 607 CDD STKc_Nek 3 258 - -
Psa6g1376 607 PANTHER SERINE/THREONINE-KINASE NEK4 1 596 - -
Psa6g1376 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Psa6g1376 607 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Psa6g1376 607 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 596 - -
Psa6g1376 607 Gene3D Transferase(Phosphotransferase) domain 1 84 273 - -
Psa6g1376 607 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1376 607 SUPERFAMILY Protein kinase-like (PK-like) 1 317 IPR011009 -
Psa6g1376 607 MobiDBLite consensus disorder prediction 372 430 - -
Psa6g1376 607 MobiDBLite consensus disorder prediction 382 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1376 Psa-Chr6 65332193 65336260 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1376 10 259 MAP Kinase Kinase Kinase AT1G53570 30.588 3.62e-35 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Psa6g1376 Pkinase 2.5e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1376 K08857 - gmx:100810347 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1376 6 65332193 65336260 Psa6g1376 6 65332193 65336260 ECH
Psa3g1451 3 132814717 132820157 Psa6g1376 6 65332193 65336260 PCT