Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1370 ATGCCTTATGTCATGTGCAATGCGGTTCATGTGAAGATTGTGGAATTCTTTTCTCACGAATGTGATGAAGAGAATTCCACTGAATTCTCTTCGATGTTCTGTATTGTATTTTTTTATGGAGTTATATCTGCACCAGAAGTGACTGATTGGCACTCTCTAACTGCTAATGATAGCTACTTGGTGGCTGCATCTGATGGGGTCTTTGAGAAGTTGAGTGTGCAAAATGTCTGTGATTTGTTGTGGGATGTACACCGTATTAGGGACATGAGATCAGAGTGCACCTCTTCATCTTCCTATTCATTAGCAGATTTAATTATTGATGCTGCCTTTGAAAAGGGCAGTATGGACAATATGGCAGCAGTTGTTGTTCCTCTGGAATCGGCCAACTCTTCTGGGAACTCGCTTAGAAGAAGCTACACTGAAAATGGTGATACAGGTTTCCCATTATTTGGTCTGCAGGAATCTGCTTACAGAAGCTCAGTTTCATCGTTAATTCCATCAGTTTCGAACTCGCTTGGAAGGGTCGAAGAAAATCACAGAGGATCGCACTCTCTGTGTCTCGATGTTCGCATTCCATTTCCCGGTACGATGGGGATCAGGGAGTTCGAGGAGAAGAATCGTAATCGAAGAGTCTCCAGCGAGGGCATTTCGGGGATTGGAACACCGCCGGAGCACCGCCGTTTTTGTAAACCGTCAAGCACGTGGATGATTCACCGTCAGCGAAGGGGATTGCGGTGGAAAGCAGAAACCCTAACGCGAAGAATAGAAGAATACATGGAGCCATTTTCATCATCACTTCAATTTGGATGTGAAAAACAAGCATTGATTCTACCACCCCAACCAATTGAAGGACTTCATGAAACTAGACCCCAACCATTCCTCACCAAAACATTTGAGGTAGTGAATGATCATAGTACCAATCATGTAGTTTCATGGAGCAGAGGTGGCACTAGCTTTGTGATTTGGGATCTACATGCTTTCTCCAATGATCTCCTTCCCAGATACTTCAAACATAATAACTTCTCGAGCTTTGTCAGACAACTTAACACTTACGGTTTTAGGAAAATAGATCCACATAAATGGGAGTTTACAAATGAAGGATTCCTAAGAGGGCACAAACATTTGTTGAGGAACATAAGGAGAAAGAAGGGACCTTCTCAGCCTGTTGACTGTTTTGGACTTGATGCGGAAATTGATCGTTTAAGGCAAGAGAAACAGGTTTTGATGAAGGAGCTTGTGAGTCTTAGACAGAAGCAATATAAGGCCACACTGTACCTTCTAGAGATGGAGCAAAGGTTACAAGGAGTAGAAGTCTATCAGAAACAAATGATGTCGTTCTTAGATGGAGCTATGAAAAACCCTGCAATAATTCACAAACTACTCCACCAAAAAGAGAAGAAAAAAGAAACCATGGCCAAAAAGAGAAGGCTAATTGGAGGTGAAGAAAGACACAGCAGTGTTAAAGTTGAGCCTTTAGAATTAGGTGATTATGAATTTTCTGTGTCCGAGTTGGAATTGCTAGCTACGGAAATGCAGGTTTTTGGAAGGGGGGAAATGGACAAGGACAATAAACCCGAGGAGGGACTAGAATTACAAGAGAGGATGGAGAGGCTACTTGATGATGAAGGGTTCTGGGAAGAACTAATGTTTAATGTGGCATTTGAGGGTAGATTTGACATTCCAACTGCTGAAGATAATGATGAGAATGAAGATGATTCAAGTGAACTACTGAATCGAGAATTTAAGATTAACTCTTTTCCTTAA 1764 0.4189 MPYVMCNAVHVKIVEFFSHECDEENSTEFSSMFCIVFFYGVISAPEVTDWHSLTANDSYLVAASDGVFEKLSVQNVCDLLWDVHRIRDMRSECTSSSSYSLADLIIDAAFEKGSMDNMAAVVVPLESANSSGNSLRRSYTENGDTGFPLFGLQESAYRSSVSSLIPSVSNSLGRVEENHRGSHSLCLDVRIPFPGTMGIREFEEKNRNRRVSSEGISGIGTPPEHRRFCKPSSTWMIHRQRRGLRWKAETLTRRIEEYMEPFSSSLQFGCEKQALILPPQPIEGLHETRPQPFLTKTFEVVNDHSTNHVVSWSRGGTSFVIWDLHAFSNDLLPRYFKHNNFSSFVRQLNTYGFRKIDPHKWEFTNEGFLRGHKHLLRNIRRKKGPSQPVDCFGLDAEIDRLRQEKQVLMKELVSLRQKQYKATLYLLEMEQRLQGVEVYQKQMMSFLDGAMKNPAIIHKLLHQKEKKKETMAKKRRLIGGEERHSSVKVEPLELGDYEFSVSELELLATEMQVFGRGEMDKDNKPEEGLELQERMERLLDDEGFWEELMFNVAFEGRFDIPTAEDNDENEDDSSELLNREFKINSFP* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1370 587 SUPERFAMILY PP2C-like 35 126 IPR036457 -
Psa6g1370 587 PRINTS Heat shock factor (HSF) domain signature 293 316 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g1370 587 PRINTS Heat shock factor (HSF) domain signature 331 343 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g1370 587 PRINTS Heat shock factor (HSF) domain signature 344 356 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g1370 587 Coils Coil 398 418 - -
Psa6g1370 587 SMART hsfneu3 289 382 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g1370 587 Pfam Protein phosphatase 2C 40 118 IPR001932 -
Psa6g1370 587 ProSitePatterns HSF-type DNA-binding domain signature. 332 356 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g1370 587 Pfam HSF-type DNA-binding 293 382 IPR000232 GO:0003700|GO:0006355|GO:0043565
Psa6g1370 587 ProSiteProfiles PPM-type phosphatase domain profile. 1 125 IPR001932 -
Psa6g1370 587 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 278 566 IPR027725 -
Psa6g1370 587 Gene3D - 22 130 IPR036457 -
Psa6g1370 587 Gene3D - 285 383 IPR036388 -
Psa6g1370 587 SUPERFAMILY "Winged helix" DNA-binding domain 290 382 IPR036390 -
Psa6g1370 587 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-7A 278 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1370 Psa-Chr6 64582464 64586848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1370 279 556 HSF AT3G22830 45.697 6.93e-81 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Psa6g1370 HSF_DNA-bind 5.7e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1370 K09419 - gmx:100794264 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa3g1435 3 130980915 130983844 Psa6g1370 6 64582464 64586848 PCT