Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1357 ATGTTCCCTGCACTTATGTCCAATTCCACTGTCTCTTCTGGTAGATTAAACCACGATGTTTCAACCATTAACTCCTCACAACATCCTCAAAAGACCAAGAAAAAAAGAAACCTCCCTGGTAACCCAGATCCTGATGCTGAAGTGATAGCTTTATCACCAAAGACACTATTAGCAACAAATAGGTTTGTGTGTGAGATCTGCAACAAGGGTTTTCAGAGAGATCAAAACCTTCAACTACATAGGAGAGGACATAACCTACCATGGAAGTTGAAGCAAAGGAACAACAAAGAAGTGGTTAAAAAGAGAGCTTATGTTTGTCCAGAGCCTTCATGTGTTCATCATAACCCTTCAAGAGCTCTTGGTGATCTTACCGGAATCAAGAAACATTACAGTAGAAAACATGGCGAGAAAAAGTGGAAATGTGATAAGTGCTCAAAGATCTATGCTGTTCATTCTGATTGGAAAGCTCACTCTAAAACCTGTGGAACTAGAGAATATAAATGTGATTGTGGTACCCTTTTTAACAGGAAAGACAGCTTCATAACACACAGAGCATTTTGTGATGCATTAGCGGAAGAAAGCGCGAGAATTTCAGCAAACCAATTATCCAACACTAACACAAACTCATTAGTTCAATCTCTCTTCCTCTTCCAAAACCAACAAAGCCACGTCACATGGGACCCACCTCAACAAAACCCTAACCCTAGCAACCTCCACCACAACATCAAGCCTGAGTCTCAAACCTTCCCTCACCCATATCTTCATCACACCAACAAAAACAACATCATGACATCATCACCTTTCCACGTCAGCACACAACAGCCTACCACCAATTCCACCACGTCACCGCACCTCTCAGCAACTGCACTTCTCCAGACAGCAGCAACCGTCGGTGCCGCCGCCATCACAGGTCAGCACACCTCTCAACTCAGCATGGCCGAGCTCGGATCGGCGACTCATTTATACATTAACAACATGAGAGGCTTCACAAAGAATGACGAGGGTCTCACGAGGGACTTTCTTGGCCTTACAAACAACGGCGGAGGAAATGGTGGCTCCGTGGATGTAAAGGATATGCTAACATTCACAGGGGGTGTAGAGTTAGAGTATGAACAAAACATGATGTTCAAGTCACAACAAGGTTTTGGTTTCTTTGGAACAACGACAACAACTGTTCCGGAATCATGGGGGAATTGTTAG 1200 0.4375 MFPALMSNSTVSSGRLNHDVSTINSSQHPQKTKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVVKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKIYAVHSDWKAHSKTCGTREYKCDCGTLFNRKDSFITHRAFCDALAEESARISANQLSNTNTNSLVQSLFLFQNQQSHVTWDPPQQNPNPSNLHHNIKPESQTFPHPYLHHTNKNNIMTSSPFHVSTQQPTTNSTTSPHLSATALLQTAATVGAAAITGQHTSQLSMAELGSATHLYINNMRGFTKNDEGLTRDFLGLTNNGGGNGGSVDVKDMLTFTGGVELEYEQNMMFKSQQGFGFFGTTTTTVPESWGNC* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1357 399 ProSitePatterns Zinc finger C2H2 type domain signature. 64 84 IPR013087 -
Psa6g1357 399 ProSiteProfiles Zinc finger C2H2 type domain profile. 62 84 IPR013087 -
Psa6g1357 399 SUPERFAMILY beta-beta-alpha zinc fingers 61 159 IPR036236 -
Psa6g1357 399 Gene3D Classic Zinc Finger 58 85 - -
Psa6g1357 399 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 380 - -
Psa6g1357 399 Gene3D Classic Zinc Finger 96 187 - -
Psa6g1357 399 MobiDBLite consensus disorder prediction 1 43 - -
Psa6g1357 399 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 18 380 - -
Psa6g1357 399 MobiDBLite consensus disorder prediction 1 28 - -
Psa6g1357 399 SMART c2h2final6 62 84 IPR013087 -
Psa6g1357 399 SMART c2h2final6 104 134 IPR013087 -
Psa6g1357 399 SMART c2h2final6 139 159 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1357 Psa-Chr6 63651180 63654008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1357 20 368 IDZ Gene Family AT4G02670 51.872 2.31e-121 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g1357 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1357 K25870 - gmx:100780056 503.056