Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1337 ATGATTTGGAAGTTTGTATTGTTCACGTGTATCGCGAAGCCAACCATTGTATCAATTAGCGTTGGACAGAATAAAGAAACCCAGCCCAAACCGACCAAACCATGTGGCCCCTTAGACACCGGTTTGGGTGAGTCGGTTTTTCGGTTTGACGGTTTGAATAATCTTGGGTTCACATGGGTTAAACCGGTCGGTTTAGCTCGCCGACAACTTCCTTGTTGGATACTGCAGCACCGGGTTTCAGAGGCTACTTGTTATGAGTTTGTTCCCAACAATACATTGAATTTCATTTACATGGAAGGACGACCAACGATGGATTGGCCAACAAGATTGCGAAATTGCTTTAGGATCTGCAAAAGGCTTGCTTATCTTCATGAAGATTGTCATCCTAAGATCATTCATCGTGATATTAAAGCTGCTAACATCCTTCTCGATTTTAAGTTTGAAGCAAAGGTTGCTGATTTTGGTCTTGCAAAGATTGCTTCCGATCTCAACACTCATGTTCTACTCCGAGTGATGGGGACTTTTGGGTATCTGGCTCCAGAATATGCAGCAAGTGGAAAACTTACAGACAAATCAGATGTTTCTCTTATGGAGTCATGCTCCTTTGAGCTATTAACTGGACGTCGATCGGTTGATAAAATCAGACACATGGATGATAGTTTGGTGGAATGGGTAAGTGTCATATGTGCTGCAGCTTGCACACGCCACTCAGCAAAGCGTCGACCAAGGATGAGCCAGGTTGTGCGTGCCTTAGAAGGAGACGTGTCACTAGCAGATCTTAATGAAGGAGTAAGACCTGGACACAGCAGTGTCTACAGTTCTTACGAAAGGTGGATTCAGAGCTACAATTCAAATTTTTTGTTTTGCAGGCATATAAAGAGGAGACTGAATAGCTCAAGCTTCTTGCTGAATGGAAGAGAAAGAAAGGTGGATTCAGAGCTCCATGTTTGTTTTTGGAAACTGGTGGCGGCTCAAGTTGCGACAGAAATCGGTTGGAGCGAGTTTGCGATTTCAATGTTTTCACTAGGAATGAAAGCTGCAATAAAGAAGATGGACATGAAAGCATCAAAAGAATTTTTTGCCGAGCTTAAGGTGTTAACGCGTGTTCATCACTTGAACTTG 1122 0.4314 MIWKFVLFTCIAKPTIVSISVGQNKETQPKPTKPCGPLDTGLGESVFRFDGLNNLGFTWVKPVGLARRQLPCWILQHRVSEATCYEFVPNNTLNFIYMEGRPTMDWPTRLRNCFRICKRLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKIASDLNTHVLLRVMGTFGYLAPEYAASGKLTDKSDVSLMESCSFELLTGRRSVDKIRHMDDSLVEWVSVICAAACTRHSAKRRPRMSQVVRALEGDVSLADLNEGVRPGHSSVYSSYERWIQSYNSNFLFCRHIKRRLNSSSFLLNGRERKVDSELHVCFWKLVAAQVATEIGWSEFAISMFSLGMKAAIKKMDMKASKEFFAELKVLTRVHHLNL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1337 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Psa6g1337 374 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 227 276 - -
Psa6g1337 374 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 84 225 - -
Psa6g1337 374 Gene3D Transferase(Phosphotransferase) domain 1 88 262 - -
Psa6g1337 374 SMART serkin_6 5 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1337 374 ProSiteProfiles Protein kinase domain profile. 1 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1337 374 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 227 276 - -
Psa6g1337 374 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 84 225 - -
Psa6g1337 374 Pfam Protein kinase domain 85 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Psa6g1337 374 SUPERFAMILY Protein kinase-like (PK-like) 83 251 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1337 Psa-Chr6 60371217 60374126 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1337 72 280 Trihelix Transcription Factor Family AT5G38560 48.980 1.89e-66 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Psa6g1337 Pkinase 7.9e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1337 - - fve:101298928 279.641