Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1336 ATGGTTCTCCAAAACGATATTGATCTGTTGAATCCACCTGTGGAACTCGAGAAGAGGAAGCACAAACTCAAACGGCTCGTTCAATCTCCTAATTCATTCTTCATGGACGTCAAATGCAAAGGTTGCTTCAACATAACTACCATGTTTAGCCACTCTCAAACTGTTGTTGTTTGTGAGAACTGTCAAACAGTTTTGTGCCAGCCAACAGGTGGCAAAGCAAGACTAACACCTTCAGGAAGAAGGGTGATTAGTTAA 255 0.4196 MVLQNDIDLLNPPVELEKRKHKLKRLVQSPNSFFMDVKCKGCFNITTMFSHSQTVVVCENCQTVLCQPTGGKARLTPSGRRVIS* 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1336 84 Hamap 30S ribosomal protein S27e [rps27e]. 24 83 IPR000592 GO:0003735|GO:0005840|GO:0006412
Psa6g1336 84 Gene3D - 5 82 IPR023407 -
Psa6g1336 84 SUPERFAMILY Zn-binding ribosomal proteins 30 78 IPR011332 GO:0006412
Psa6g1336 84 Pfam Ribosomal protein S27 30 76 IPR000592 GO:0003735|GO:0005840|GO:0006412
Psa6g1336 84 PANTHER 40S RIBOSOMAL PROTEIN S27 2 76 IPR000592 GO:0003735|GO:0005840|GO:0006412
Psa6g1336 84 PANTHER 40S RIBOSOMAL PROTEIN S27-RELATED 2 76 - -
Psa6g1336 84 ProSitePatterns Ribosomal protein S27e signature. 38 70 IPR000592 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1336 Psa-Chr6 60356956 60358002 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1336 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 92.105 1.68e-49 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1336 K02978 - thj:104807231 149.443