Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1333 ATGACAAAAATAAGACAATTTTATAATAAGAGTCAGAAGATTGCAAAATGTTTGTGTTGTGATCTTTGCAACCAACTTCTCACTGACGCCACTAAAATCATCGACTGCTTTCATACTTTTTGCAAAGACTGCTTATATTCTAAAATCGAAGAAGAAGATTTGGAATGTTGTCCTGTATGCGACATTGATCTAGGCACTGATCCTCTTACCAAAATGAGGTCGGATATTATCTTGCAGAACATGAGGAATCACTTATTTCCTCTGGGGAAAGAAAAGGAGGCATTTGAATATCTTCCAAAAGTTCTAATGAAAACCAATGGGCATTCTATGCCTCAGCTGCAACATTCTAGTACTTCAAGTTCTGCTACTAAAAGAAAACTCAAGAAATCAAAAGTTGCGGATTCTGAGGAACAAATCAATAAAAAAATGAAGATTGAGAATGAAGCATAG 450 0.3533 MTKIRQFYNKSQKIAKCLCCDLCNQLLTDATKIIDCFHTFCKDCLYSKIEEEDLECCPVCDIDLGTDPLTKMRSDIILQNMRNHLFPLGKEKEAFEYLPKVLMKTNGHSMPQLQHSSTSSSATKRKLKKSKVADSEEQINKKMKIENEA* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1333 149 ProSiteProfiles Zinc finger RING-type profile. 20 61 IPR001841 -
Psa6g1333 149 SUPERFAMILY RING/U-box 14 72 - -
Psa6g1333 149 SMART ring_2 20 60 IPR001841 -
Psa6g1333 149 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 99 IPR013083 -
Psa6g1333 149 MobiDBLite consensus disorder prediction 127 149 - -
Psa6g1333 149 Pfam Zinc finger, C3HC4 type (RING finger) 20 60 IPR018957 GO:0046872
Psa6g1333 149 MobiDBLite consensus disorder prediction 107 149 - -
Psa6g1333 149 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Psa6g1333 149 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 10 141 IPR044807 GO:0004842
Psa6g1333 149 MobiDBLite consensus disorder prediction 107 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1333 Psa-Chr6 60239531 60241297 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1333 10 93 C3H Transcription Factor Family AT2G30580 54.762 5.69e-30 109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1333 6 60239531 60241297 Psa6g1333 6 60239531 60241297 ECH
Psa3g1403 3 125959625 125964795 Psa6g1333 6 60239531 60241297 ECH
Psa3g1403 3 125959625 125964795 Psa6g1333 6 60239531 60241297 PCT