Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1330 ATGGAGGAAGTTGAACAAGCTAGTAGAACAGCTGTTGAAAGCTGTCATAGAGTTCTGAGTATGTTATCTCAACCAAGAGATCAAGTTCATCATAAGAATTTAATGGTGGAAACTGGTGAAGCTGTGAATAGGTTCAAGAAAGTTGTGTCTTTGCTTCATAATGGAATGGGTCATGCAAGAGTTAGGAAGTTTAGGAATCCGAAACAAGTTCCTTTTCCTCAAAATGTTTTCTTAGACAATCCCATTTGCAAGAAACCGAACAATCATCGCACCAAAAAAGTTCACTTTGGTCAAACTACTTATCCTGAGAATTCGGTTCAGGAACTCGGATTGACCGTGAGAAATCCAAATCCAAATCCAAACACTTCTTTGGAATTGAGCTCTAATGGGAAGAGTCCTCTTCCCCTTGCTCAACAAGCTGCGTCGACTCACTATCCGTTCTTTCAGCATCAGCAGCAACAGAGGTTAATGATGCAGCAGCAACAGCACCAGCAGCAGCAGCAAATGAAGCATCAAGCGGAAATGATGTTTCGACGGAACAACATTAACAGCGTAAACCTTAATTTTGACAACACTACTAGTGGCACGCTGACAATGTCGTCTACTAGGTCTTTCATTTCGTCGTTGAGCATAGACGCAAGTGTTGCTAACTTGGATGGAAGTTCCTTCCATTTAGTGGGAGCTCCAATCTCTTCGGATCAGAATTCGCAGCAGCACAAGAGAAAATGTTCTGCTAGAGGCGATGAGGGAAATCTGAAATGTGGCAGCAGTTCGAAATGCCATTGCTCAAAGAAGAGGAAGCATAGAGTGAAGAGATCAATCAAGGTGCCTGCTATCAGCAACAAACTTGCCGATATCCCTCCTGATGATTACTCGTGGAGGAAGTACGGGCAGAAGCCGATCAAGGGCTCTCCTCACCCTAGGGGATATTACAAGTGCAGCAGCATGAGAGGATGCCCGGCTAGGAAGCATGTCGAGAGGTGTTTGGAAGAGCCGACTATGCTAATTGTTACCTATGAAGGTGAGCATAATCATCCCAAGGTACCAACACAATCTGCAAATGCATGA 1068 0.441 MEEVEQASRTAVESCHRVLSMLSQPRDQVHHKNLMVETGEAVNRFKKVVSLLHNGMGHARVRKFRNPKQVPFPQNVFLDNPICKKPNNHRTKKVHFGQTTYPENSVQELGLTVRNPNPNPNTSLELSSNGKSPLPLAQQAASTHYPFFQHQQQQRLMMQQQQHQQQQQMKHQAEMMFRRNNINSVNLNFDNTTSGTLTMSSTRSFISSLSIDASVANLDGSSFHLVGAPISSDQNSQQHKRKCSARGDEGNLKCGSSSKCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPTMLIVTYEGEHNHPKVPTQSANA* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1330 355 Pfam WRKY DNA -binding domain 289 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa6g1330 355 SUPERFAMILY WRKY DNA-binding domain 285 347 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa6g1330 355 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 354 IPR044810 GO:0003700
Psa6g1330 355 Gene3D WRKY domain 273 349 IPR036576 GO:0003700|GO:0006355|GO:0043565
Psa6g1330 355 Pfam Plant zinc cluster domain 240 285 IPR018872 -
Psa6g1330 355 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 2 354 - -
Psa6g1330 355 ProSiteProfiles WRKY domain profile. 282 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
Psa6g1330 355 SMART WRKY_cls 287 347 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1330 Psa-Chr6 59953751 59956696 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1330 1 352 WRKY Transcription Factor Family AT2G30590 53.985 5.67e-114 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Psa6g1330 WRKY 5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1330 - - gmx:100170681 516.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1330 6 59953751 59956696 Psa6g1330 6 59953751 59956696 ECH