Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1328 ATGGCTGGTTCTAGTTCTGTTTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGAAAATGTATTAGAGGTTGTGTTTTTGCACCTTATTTTAGTCATGAACAAGGTGCTACACATTTTGCAGCCATTCATAAGGTTTTTGGTGCAAGCAATGTCTCAAAGCTTCTTGCTCAACTTCCTATAAGCGATCGATGCGAAGCCGCGGTTACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCTATTTATGGATGTGTTTCTCATATCTTTGCCCTCCAACAACAGGTGGTTAACTTACAAACACAACTGGCTTATCTCAAAGAACAAGCAGCACAAACATGTATGAATAATTCATCTACCAATGAAAACCCTAATGAAAAGTCAACTCCTCATACTCTCCCTCAAGATCTTCAAAGTTGGTTCAATGTGGAAAACTCTAATAATTACCAGCATGGACAAGAATTTCTCACTAATAACCTGTCTAATATTTCCTTAACAACACAATGTTATGGTAACAATAACAATAGCCACATGGATCTAAACCCTATGAGGAACTATGAAAATTCAAGAGTCATGGAAGAAAACAGTTCATCATTTTCTAGCTTTGAGGAAAGTACTTCTAATTCCATATCTTATGACATGCAAACAAATAGGAGGACATGGGGTTTTGATGATGTTGAAGACCTACATTCAGTTGCTTTTGGATATAGTTGA 720 0.3722 MAGSSSVSGSPCGACKFLRRKCIRGCVFAPYFSHEQGATHFAAIHKVFGASNVSKLLAQLPISDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQTQLAYLKEQAAQTCMNNSSTNENPNEKSTPHTLPQDLQSWFNVENSNNYQHGQEFLTNNLSNISLTTQCYGNNNNSHMDLNPMRNYENSRVMEENSSSFSSFEESTSNSISYDMQTNRRTWGFDDVEDLHSVAFGYS* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1328 239 Coils Coil 91 111 - -
Psa6g1328 239 PANTHER LOB DOMAIN CONTAINING PROTEIN 7 238 - -
Psa6g1328 239 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
Psa6g1328 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 7 238 - -
Psa6g1328 239 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1328 Psa-Chr6 59761066 59762590 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1328 11 238 AS2 family AT3G58190 52.402 1.06e-72 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa6g1328 LOB 7.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1328 K13945 - gmx:100776678 323.553
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1328 6 59761066 59762590 Psa6g1328 6 59761066 59762590 ECH
Psa3g1382 3 124038399 124040217 Psa6g1328 6 59761066 59762590 PCT