Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1327 ATGGCTTCTTCAAATGGCTTTGGCTCTAGCACCAGCTCTTCAGGATCTCCATGTGGGGCATGCAAGTTTCTCCGCAGAAAATGTACATCCGAGTGCATATTTGCACCTTATTTTTGCTGTGAACAAGGACCTGCTAGATTTGCAGCCATTCATAAAATATTTGGTGCTAGCAACGTTTCCAAGATGCTATTGCATATACCTCCTCAAGATCGTTATGATGCTGTTGTCACAATTGGTTATGAAGCTCAAGCTCGTATTATAGATCCTGTTTATGGCTGCGTCTCCCATATTTTTGCTTTGCAGCAACAGGTAGCAAGCTTGCAAGCACAACTGATGCAAGTGAAGGCACAGCTGAGTGAAAACCTGGAGGAGTCAAAGAACATAGAGAATCAGTGGTCAGGAAATGTTGCTAGACCACAAATACTCACAAACATGAACCCTAAATCTCCTAAGAGTTCGCTTGAGTCAATTGATTACAGCAGCTGCAGCATCAGTGATGGAATGAGCATGCAAGACATACAAAGATACAGAGAAGGTTTCACTTTCTCGTTGCAAGCTTATTCTAAGAAAAAGAATGATTTGACTGAGCTTCAAGAACTGGCTCTAAGAATGGCAGGGAACTAA 624 0.4231 MASSNGFGSSTSSSGSPCGACKFLRRKCTSECIFAPYFCCEQGPARFAAIHKIFGASNVSKMLLHIPPQDRYDAVVTIGYEAQARIIDPVYGCVSHIFALQQQVASLQAQLMQVKAQLSENLEESKNIENQWSGNVARPQILTNMNPKSPKSSLESIDYSSCSISDGMSMQDIQRYREGFTFSLQAYSKKKNDLTELQELALRMAGN* 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1327 207 Coils Coil 97 131 - -
Psa6g1327 207 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 9 205 - -
Psa6g1327 207 Pfam Lateral organ boundaries (LOB) domain 17 115 IPR004883 -
Psa6g1327 207 ProSiteProfiles LOB domain profile. 16 118 IPR004883 -
Psa6g1327 207 PANTHER LOB DOMAIN CONTAINING PROTEIN 9 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1327 Psa-Chr6 59711469 59712821 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1327 1 207 AS2 family AT2G42430 48.594 7.57e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Psa6g1327 LOB 9.2e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1327 K13944 - gmx:100801508 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1327 6 59711469 59712821 Psa6g1327 6 59711469 59712821 ECH
Psa3g1376 3 123194003 123195287 Psa6g1327 6 59711469 59712821 PCT