Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1326 ATGGAGTTCAGCTACCTCCAAGAAGATTCAAAGAGTTCGAGCGACGAAAACATCGACCGATCCTCCGACCAAAACCACGACGACGACCACGATCATGACATGGGAATTGGTAGATCCTATGAGTGTGTATTTTGCAAAAGAGGTTTCACAACTGCTCAAGCTTTAGGTGGACACATGAACATACATAGAAAAGATAGAGCAAACAATAACAAAAGTGTCACTAAAACAAATTTTATTCCACCTAGCTCAAGCAAATTAGTACTTGATCATCATCATGATAACTATGGAGATCTTGGATTTTATTCAACAATTAATCCAAACCATCTTGCAAGAAGTGGTTATTATTCTTCTTCAATTTCATCCACAACTACTACTCCTGAGGTAGATTCTCTTAACTATCATCAACTATATTTTCCTTCACATCATGTGCAATATAGTGAGATGCTTTGTGTTGAAAATCAAAGAATGTTTGGACAAGATTGGAGGGGTTTGAGCTTGTATACAAATCCATTGATTAAAGACAAGATAGAAAACAACAATGAAGTGGATGAATTGGATTTGGAGCTTAGACTTGGTCATTATCCATAG 588 0.3673 MEFSYLQEDSKSSSDENIDRSSDQNHDDDHDHDMGIGRSYECVFCKRGFTTAQALGGHMNIHRKDRANNNKSVTKTNFIPPSSSKLVLDHHHDNYGDLGFYSTINPNHLARSGYYSSSISSTTTTPEVDSLNYHQLYFPSHHVQYSEMLCVENQRMFGQDWRGLSLYTNPLIKDKIENNNEVDELDLELRLGHYP* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1326 195 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Psa6g1326 195 Gene3D Classic Zinc Finger 12 91 - -
Psa6g1326 195 PANTHER OS07G0101800 PROTEIN 7 195 - -
Psa6g1326 195 MobiDBLite consensus disorder prediction 1 32 - -
Psa6g1326 195 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 195 - -
Psa6g1326 195 SUPERFAMILY beta-beta-alpha zinc fingers 38 66 IPR036236 -
Psa6g1326 195 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Psa6g1326 195 Pfam C2H2-type zinc finger 40 64 - -
Psa6g1326 195 MobiDBLite consensus disorder prediction 12 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1326 Psa-Chr6 59357642 59359390 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1326 38 195 C2H2 Transcription Factor Family AT4G17810 31.677 2.07e-15 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Psa6g1326 zf-C2H2_6 1.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1326 - - gmx:102670484 184.111