Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Psa6g1323 | ATGGAAGGAAACTATCAAAACAGAAACACAACAACTACTCATAGAGATCATCATCATCATCATCACCATCATGGATATGAGGAGCATTCATGGGGAACATCATGGCCTGCAAGAAACTATGCTTGTAGCTTTTGCAAAAGAGAGTTTAGATCAGCTCAAGCTTTAGGTGGACACATGAATGTTCATAGAAGAGATAGGGCAAGATTAAGATCATCATTAATATCTTCTTGGGTTAATTCTGATCAATGCCCTAATACCAACAACAATAATAATGCTAAACCTAACCCTACCATTACTTCAACTAATGATGAGATTTTCAGTTCTTCACATTATCTCTCTTTATCTTCTTCTTCTTCTTCACCTTCCTTACCTCATACTAGCCATGATGATAAGAAACCTAGACTCACACCTTCTCTATCTCTTCCTCTTCTGAATCCTCAAAGAAGTGAAATCATGAAAAGCTATCAAGATGTCAAGAAGCACAATGTTTTGATGAATAATGAGCAAAACATTACATTGGAGTTAGGTATAGGGTTGTTTAAACACCATGAAGAGAAGTTAGATTTGGAGCTTCGACTTTAA | 582 | 0.3608 | MEGNYQNRNTTTTHRDHHHHHHHHGYEEHSWGTSWPARNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLISSWVNSDQCPNTNNNNNAKPNPTITSTNDEIFSSSHYLSLSSSSSSPSLPHTSHDDKKPRLTPSLSLPLLNPQRSEIMKSYQDVKKHNVLMNNEQNITLELGIGLFKHHEEKLDLELRL* | 194 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Psa6g1323 | 193 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 42 | 62 | IPR013087 | - | |
| Psa6g1323 | 193 | PANTHER | OS07G0101800 PROTEIN | 7 | 193 | - | - | |
| Psa6g1323 | 193 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Psa6g1323 | 193 | SMART | c2h2final6 | 40 | 62 | IPR013087 | - | |
| Psa6g1323 | 193 | MobiDBLite | consensus disorder prediction | 116 | 141 | - | - | |
| Psa6g1323 | 193 | PANTHER | TRANSCRIPTIONAL REGULATOR SUPERMAN | 7 | 193 | - | - | |
| Psa6g1323 | 193 | SUPERFAMILY | beta-beta-alpha zinc fingers | 37 | 66 | IPR036236 | - | |
| Psa6g1323 | 193 | Pfam | C2H2-type zinc finger | 40 | 64 | - | - | |
| Psa6g1323 | 193 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 40 | 67 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Psa6g1323 | Psa-Chr6 | 59088216 | 59089116 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Psa6g1323 | 8 | 193 | C2H2 Transcription Factor Family | AT3G23130 | 37.949 | 3.06e-24 | 92.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Psa6g1323 | - | - | mtr:MTR_1g070265 | 239.58 |