Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1321 ATGGCAACCGAAGAATCCATCATCGTCGTCCTTGAACTCGTGTCCGAACCAGCAATCGCCGAACCTCCAGTCTCGGAGAAAGTGGAGGAACCAAAGGCTGAAACTGAGAAGACGAAGAAAGCCAAGGAATCGAAACCTAAGAAAGCTTCCAAACCACGAAACCCTGCTTCTCATCCTACTTACGAAGAGATGATTAAGGACGCAATAGTGTCGTTGAAGGAGAAGAATGGTTCGAGCCAATATGCTATAGCGAAATTCATCGAGGAGAAACAGAAACAGCTTCCTGCTAACTTCAAGAAGTTATTGCTCCAAAACTTGAAGAAGAACGTTGCTTCTGGAAAGCTTGCTAAGGTTAAAGGTTCATTCAAGCTTTCAGCAGCGGCTAAGAAGCCAGCAGTTGCCAAGCCGAAGACAAAGCCAGCTGCCAAGAAGGCTGTGAAAGCTAAGCCAGTGGCTAAGCCTAAAGCTAAAGCTGTTGTTAAGCCAAAGGTTGCTTCAAAGGCAAAATCTGTTACTACCAAGCCCAAAGCGGCTGCCGCCAAGCCTAAAACTGTTGCTAAGACAAAAGCAGTTGCGAAACCAAAGGCCAAGGCAAGGCCCGCAAAGGTTGCAAAGACATCGACCAAGACGACGCCAGGAAAGAAAGTTGCTGTTGCGAAGACTGCGCCTAAGAAAGTTGCTGGTACAAAGAAAGCTCCGGTGAAGAGTGTGAAAGCTAAGAGCGTCAAGTCTTCCGGTGTGAAGAGAGGAGGAAGGAAGTGA 762 0.4751 MATEESIIVVLELVSEPAIAEPPVSEKVEEPKAETEKTKKAKESKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLLQNLKKNVASGKLAKVKGSFKLSAAAKKPAVAKPKTKPAAKKAVKAKPVAKPKAKAVVKPKVASKAKSVTTKPKAAAAKPKTVAKTKAVAKPKAKARPAKVAKTSTKTTPGKKVAVAKTAPKKVAGTKKAPVKSVKAKSVKSSGVKRGGRK* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1321 253 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 57 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1321 253 PANTHER HISTONE H1.1 2 249 - -
Psa6g1321 253 Pfam linker histone H1 and H5 family 58 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1321 253 MobiDBLite consensus disorder prediction 23 43 - -
Psa6g1321 253 MobiDBLite consensus disorder prediction 136 162 - -
Psa6g1321 253 MobiDBLite consensus disorder prediction 21 62 - -
Psa6g1321 253 Gene3D - 52 142 IPR036388 -
Psa6g1321 253 CDD H15 55 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1321 253 PRINTS Histone H5 signature 44 65 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1321 253 PRINTS Histone H5 signature 71 88 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1321 253 PRINTS Histone H5 signature 143 157 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1321 253 PRINTS Histone H5 signature 174 191 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1321 253 PRINTS Histone H5 signature 196 215 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1321 253 MobiDBLite consensus disorder prediction 188 202 - -
Psa6g1321 253 MobiDBLite consensus disorder prediction 126 253 - -
Psa6g1321 253 PANTHER HISTONE H1 2 249 - -
Psa6g1321 253 SMART h15plus2 55 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1321 253 SUPERFAMILY "Winged helix" DNA-binding domain 52 131 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1321 Psa-Chr6 58581373 58582604 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1321 54 137 Single Myb Histone (SMH) Gene Family AT1G17520 37.931 8.69e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1321 K11275 - gmx:100795994 132.109