Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1319 ATGGCAACCGAGGAACCCATCATCGCGGTTGAACCCGTTCCCGAACCTTCAGTCTTGGAGAAAGTGGAAGAACCCAAGGCTGAAACGGAGAAGACGAAGAAATCCAAGGAATCGAAACCTAAGAAAGCTTCCAAACCACGAAACCCTGCTTCTCATCCTACTTACGAAGAGATGATTAAGGATGCAATAGTGTCACTGAAGGAGAAGAACGGTTCCAGCCAATATGCGATTGCGAAATTCATTGAAGAGAAACAGAAACAGCTTCCTGCTAACTTTAAGAAACTATTGCTTCAGAGTTTGAAGAAAAAAGTTGCTTCTGGAAAGCTTGTTAAGGTTAAAGCTGCGAAACCAAAGCCTAAGGCAAAGTCTACAAAGGTTGCTAGGACATCGACAAAGACGACACCTGGAAAGAAAGTTGCTGTTGCCAAGCCTGCACCTAAGAAAGCAGCGGCTGCAAAGAAAGCTCCTGTCAAGAGTGTGAAAGCTAAGAGTGTGAAGTCTCCAGCCAAGAAGGCTACCGGGGTGAAGAGAGGGGGAAGGAAATGA 546 0.4579 MATEEPIIAVEPVPEPSVLEKVEEPKAETEKTKKSKESKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLLQSLKKKVASGKLVKVKAAKPKPKAKSTKVARTSTKTTPGKKVAVAKPAPKKAAAAKKAPVKSVKAKSVKSPAKKATGVKRGGRK* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1319 181 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 51 143 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1319 181 SMART h15plus2 49 115 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1319 181 SUPERFAMILY "Winged helix" DNA-binding domain 48 122 IPR036390 -
Psa6g1319 181 PANTHER HISTONE H1 114 181 - -
Psa6g1319 181 PANTHER HISTONE H1 2 114 - -
Psa6g1319 181 MobiDBLite consensus disorder prediction 111 181 - -
Psa6g1319 181 Gene3D - 47 134 IPR036388 -
Psa6g1319 181 MobiDBLite consensus disorder prediction 1 56 - -
Psa6g1319 181 MobiDBLite consensus disorder prediction 111 125 - -
Psa6g1319 181 PANTHER HISTONE H1.1 114 181 - -
Psa6g1319 181 PANTHER HISTONE H1.1 2 114 - -
Psa6g1319 181 PRINTS Histone H5 signature 38 59 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1319 181 PRINTS Histone H5 signature 65 82 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1319 181 PRINTS Histone H5 signature 141 155 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1319 181 Pfam linker histone H1 and H5 family 52 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1319 181 MobiDBLite consensus disorder prediction 17 37 - -
Psa6g1319 181 CDD H15 49 109 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1319 Psa-Chr6 58526236 58527390 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1319 48 181 Single Myb Histone (SMH) Gene Family AT1G72740 27.397 1.79e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1319 K11275 - gmx:100795994 122.479