Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1318 ATGACCACAGAAGAACCCATTGTTGCGGTGGAGTCGGTTCCCGAACCAATTGTCACCGAACCAACAACAGTTACCGAACCTCAGGTCCCGGAAAAGGAAGAGCCAAAGGCTGAAGTAGGGAAGACGAAGAAGAAAACCAAAGAATCGAAGTCTAAGAAAGCTTCCAAACCACGAAACCCTGCTTCACACCCTACTTATGAAGAGATGATTAAGGATGCGATAGTGTCTCTGAAGGAGAAGAATGGTTCGAGCCAATATGCTATAGCGAAATTCATCGAGGAGAAACAGAAACAGCTTCCCGCTAACTTCAAGAAGCTATTGCTCCAAAACTTGAAGAAGAATGTTGCTTCTGGAAAGCTTGCTAAGGTTAAAGGTTCATTCAAGCTTTCAGAAGCGGCTAAGAAGCCAGCAGTTGCCAAGCCGAAGACAAAGCCAGCTGCCAAGAAGGCTGTGAAAGCTAAGCCAGTGGCTAAGCCTAAAGCTAAAGCTGTTGTTAAGCCAAAGGTTGCTTCAAAGGCAAAATCTGTTACTACCAAGCCCAAAGCTGCTGCCAAGCCTAAAACTGTTGCTAAGACGAAAGCAGCTGTGAAACCAAAGGCCAAGGCAAGGCCTGCAAAGGTTGCAAAGACATCGACCAAGACGACGCCAGGAAAGAAAGTTGCTGTTGCGAAGACTGCGCCTAAGAAAGCTGCTGGTACAAAGAAAGCTCCGGTGAAGAGTGTGAAATCTCCAGCAAAGAAGGCTTCCGGTGTGAAGAGAGGAGGAAGGAAATGA 774 0.469 MTTEEPIVAVESVPEPIVTEPTTVTEPQVPEKEEPKAEVGKTKKKTKESKSKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLLQNLKKNVASGKLAKVKGSFKLSEAAKKPAVAKPKTKPAAKKAVKAKPVAKPKAKAVVKPKVASKAKSVTTKPKAAAKPKTVAKTKAAVKPKAKARPAKVAKTSTKTTPGKKVAVAKTAPKKAAGTKKAPVKSVKSPAKKASGVKRGGRK* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1318 257 MobiDBLite consensus disorder prediction 27 45 - -
Psa6g1318 257 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 62 131 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1318 257 MobiDBLite consensus disorder prediction 1 67 - -
Psa6g1318 257 SMART h15plus2 60 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1318 257 PANTHER HISTONE H1 2 257 - -
Psa6g1318 257 SUPERFAMILY "Winged helix" DNA-binding domain 57 136 IPR036390 -
Psa6g1318 257 CDD H15 60 137 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1318 257 Gene3D - 57 143 IPR036388 -
Psa6g1318 257 MobiDBLite consensus disorder prediction 192 206 - -
Psa6g1318 257 MobiDBLite consensus disorder prediction 130 257 - -
Psa6g1318 257 PANTHER HISTONE H1.1 2 257 - -
Psa6g1318 257 PRINTS Histone H5 signature 49 70 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1318 257 PRINTS Histone H5 signature 76 93 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1318 257 PRINTS Histone H5 signature 148 162 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1318 257 PRINTS Histone H5 signature 200 219 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1318 257 MobiDBLite consensus disorder prediction 141 167 - -
Psa6g1318 257 Pfam linker histone H1 and H5 family 63 130 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1318 Psa-Chr6 58493189 58494801 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1318 59 142 Single Myb Histone (SMH) Gene Family AT1G17520 36.782 1.32e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1318 K11275 - gmx:100775944 132.109