Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1317 ATGGCCACAGAAGAACCCATTGTTGCGGTGGAGTCGGTTCCCGAACCAATTGTCACCGAACCAACAACAGTTACCGAACCTCAGGTCCCGGAAAAGGAAGAGCCAAAGGCTGAAGTAGGGAAGACGAAGAAGAAAACCAAAGAATCGAAGTCTAAGAAAGCTTCCAAACCACGAAACCCTGCTTCACACCCTACTTACGAAGAGATGATTAAGGATGCTATTGTGTCTCTGAAGGAGAAGAACGGTTCGAGCCAATACGCGATTGCGAAATTCATCGAAGAGAAACAGAAACAGCTTCCTGCTAACTTCAAGAAGCTATTGCTCCAAAATTTGAAGAAGAATGTTGCTTCTGGAAAGCTTGTTAAGTCCAAAACAACCGCCAAGCCAAAAACTGTTGCGAAGCCCAAGGCATCTGTCAAACCCAAGCTTAAGGCAAAGCCCGCAAAGGTTGCAAAGACATCAACAAAGACGACGCCGGGAAAGAAAGTTGCTGTGGCGAAGACCGCACCTAAGAAAGTAGCTGCTGCAAAGAAAGTTCCAGTGAAGAGTCTGAAATCTTCAGCAAAGAAAGCTTCCGGTGTGAAGAGAGGAGGAAGGAAGTGA 603 0.4643 MATEEPIVAVESVPEPIVTEPTTVTEPQVPEKEEPKAEVGKTKKKTKESKSKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLLQNLKKNVASGKLVKSKTTAKPKTVAKPKASVKPKLKAKPAKVAKTSTKTTPGKKVAVAKTAPKKVAAAKKVPVKSLKSSAKKASGVKRGGRK* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1317 200 MobiDBLite consensus disorder prediction 27 45 - -
Psa6g1317 200 MobiDBLite consensus disorder prediction 1 67 - -
Psa6g1317 200 MobiDBLite consensus disorder prediction 120 200 - -
Psa6g1317 200 Pfam linker histone H1 and H5 family 63 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1317 200 Gene3D - 58 152 IPR036388 -
Psa6g1317 200 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 62 145 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1317 200 SMART h15plus2 60 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1317 200 PANTHER HISTONE H1 2 124 - -
Psa6g1317 200 PANTHER HISTONE H1 125 198 - -
Psa6g1317 200 CDD H15 60 137 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1317 200 SUPERFAMILY "Winged helix" DNA-binding domain 59 138 IPR036390 -
Psa6g1317 200 MobiDBLite consensus disorder prediction 135 149 - -
Psa6g1317 200 PANTHER HISTONE H1.1 125 198 - -
Psa6g1317 200 PANTHER HISTONE H1.1 2 124 - -
Psa6g1317 200 PRINTS Histone H5 signature 49 70 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1317 200 PRINTS Histone H5 signature 76 93 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1317 200 PRINTS Histone H5 signature 155 169 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1317 Psa-Chr6 58427608 58428834 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1317 59 138 Single Myb Histone (SMH) Gene Family AT1G17520 35.955 2.43e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1317 K11275 - gmx:100795994 117.472