Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1316 ATGGCCACAAAAGAACCCATAGTGGAAACCGTTCCAAAACTAACCATACCCGAACCTCTAGCCTCGGAGAAACACAAACCAAAGGCTCAAGCAGAGAAGACCAAGAAAGCTTCCAAACCTCGAAGCCCTTCTTCTCATCCTTCCTACTCGGAGATGATCAAAGATGCAATAGTGTCACTGAAGGAGAAGAACGGTTCTAGCCAATATGCGATTGCGAAATTCATCGAAGAGAAACAGAAACAGCTTCCTGCTAACTTCAAGAAGCTATTGCTCCAAAACTTGAAGAAGAACGTTGCTTCTGGAAAGCTTGCTAAGGTTAAAGGTTCATTCAAGCTTTCTCTCCCAACGCCCAAACCTAAGACCAAGCCAGTTGCAAAGGTGAAAACGTTGAAGGTTAAGCCAGGTGCAATACCAAAAGCTAAAGCTGCTGCCAAGGAAAAGATTGCTTCAAAGGCCAAAGCTGTAACCGCCAACCCCAAAGTTGCGGCTTCCAAGAGCAAAGCTTCTGTGAAACCTAAGCCGATTGAGAGGCTTGCAAAGGTTGCAAAAAAGACTCCGGGGAAGAAAGTAACTGTTGTGAAGAAAGTTGCGGCAGTGAAGAGCGTGAAGGCTAAGAGCATTAAGTCTCCGGTAAAACAGGTTTTGACGAAGAGAGGGGGAAGGAAATGA 669 0.4559 MATKEPIVETVPKLTIPEPLASEKHKPKAQAEKTKKASKPRSPSSHPSYSEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLLQNLKKNVASGKLAKVKGSFKLSLPTPKPKTKPVAKVKTLKVKPGAIPKAKAAAKEKIASKAKAVTANPKVAASKSKASVKPKPIERLAKVAKKTPGKKVTVVKKVAAVKSVKAKSIKSPVKQVLTKRGGRK* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1316 222 MobiDBLite consensus disorder prediction 1 51 - -
Psa6g1316 222 Pfam linker histone H1 and H5 family 46 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1316 222 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 45 114 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1316 222 CDD H15 43 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1316 222 PRINTS Histone H5 signature 32 53 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1316 222 PRINTS Histone H5 signature 59 76 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1316 222 PRINTS Histone H5 signature 140 154 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1316 222 PRINTS Histone H5 signature 177 194 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1316 222 PRINTS Histone H5 signature 199 218 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1316 222 MobiDBLite consensus disorder prediction 19 39 - -
Psa6g1316 222 PANTHER HISTONE H1 2 222 - -
Psa6g1316 222 PANTHER LINKER HISTONE H1 AND H5 FAMILY PROTEIN 2 222 - -
Psa6g1316 222 SUPERFAMILY "Winged helix" DNA-binding domain 42 125 IPR036390 -
Psa6g1316 222 Gene3D - 40 130 IPR036388 -
Psa6g1316 222 SMART h15plus2 43 109 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1316 Psa-Chr6 58415425 58417418 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1316 47 193 Single Myb Histone (SMH) Gene Family AT1G72740 28.000 5.74e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1316 K11275 - gmx:100795994 140.198
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa6g1316 6 58415425 58417418 Psa6g1316 6 58415425 58417418 ECH