Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1314 ATGGCCACAGAAGAACCAATCGTCGCCGTGGAAACTGTTCCCGAACCAATTGTCACCGAGCCAACAACAATCACCGAACCTGAGGTCCCGGAGAAGGAGGAACCAAAGGCTGAAGTAGAGAAGACTAAGAAAGCCAAAGGATCCAAACCTAAGAAAGCTTCCAAACCACGAAACCCTGCTTCTCATCCTACTTACGAAGAGATGATTAAGGATGCAATAGTGTCGCTGAAGGAGAAGAACGGTTCGAGCCAATACGCGATTGCGAAATTCATCGAAGAGAAACAGAAACAGCTTCCTGCTAACTTCAAGAAGCTATTGCTCCAAAACTTGAAGAAGAACGTTGCTTCTGGAAAGCTTATTAAGGTTAAAGGCTCATTCAAGCTTTCAGCTGCGGCCAAAAAGCCTGCAGTCGCCAAGCCGAAGGCCAAGACAGCTGCCAAGGCGAAGTCCGTTAAGGCCAAGCCAGCTGCAAAGCCTAAAGCTAAAGCTGTTGTCAAACCAAAGGTTGCTTCAAAGGCCAAAGCTGTAGCTGCGAAGCCCAAAAAAGCCGCTGCCAAGCCCAAAACTGTTGCGGCTAAGACTAAGCCTACTGCCGCCAAGCCCAAGGCGGTTGTCAAACCGAAGTCCAAGGTGAAGCCAGCGAAGGTTGCTAAGACATCTGTGAAGACAACTCCGGGGAAGAAAGTTGCAGCTGTGAAGAAAGTTGCTGCGAAGAAAGTTCCGGTTAAGAGTGTGAAGGCTAAAAGCGTGAAGTCTCCAGTGAAAAAGGTTTCTGTCAAGAGAGGTGGAAGGAAATGA 798 0.485 MATEEPIVAVETVPEPIVTEPTTITEPEVPEKEEPKAEVEKTKKAKGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLLQNLKKNVASGKLIKVKGSFKLSAAAKKPAVAKPKAKTAAKAKSVKAKPAAKPKAKAVVKPKVASKAKAVAAKPKKAAAKPKTVAAKTKPTAAKPKAVVKPKSKVKPAKVAKTSVKTTPGKKVAAVKKVAAKKVPVKSVKAKSVKSPVKKVSVKRGGRK* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1314 265 SUPERFAMILY "Winged helix" DNA-binding domain 58 138 IPR036390 -
Psa6g1314 265 Gene3D - 57 137 IPR036388 -
Psa6g1314 265 MobiDBLite consensus disorder prediction 145 167 - -
Psa6g1314 265 MobiDBLite consensus disorder prediction 131 226 - -
Psa6g1314 265 SMART h15plus2 59 125 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1314 265 CDD H15 59 129 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1314 265 PRINTS Histone H5 signature 48 69 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1314 265 PRINTS Histone H5 signature 75 92 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1314 265 PRINTS Histone H5 signature 148 162 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1314 265 PRINTS Histone H5 signature 209 228 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Psa6g1314 265 PANTHER HISTONE H1 2 265 - -
Psa6g1314 265 MobiDBLite consensus disorder prediction 242 265 - -
Psa6g1314 265 PANTHER HISTONE H1.1 2 265 - -
Psa6g1314 265 Pfam linker histone H1 and H5 family 62 129 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1314 265 MobiDBLite consensus disorder prediction 26 45 - -
Psa6g1314 265 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 61 130 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1314 265 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1314 Psa-Chr6 58347031 58348657 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1314 58 141 Single Myb Histone (SMH) Gene Family AT1G17520 37.931 4.27e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1314 K11275 - gmx:100795994 129.028