Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa6g1313 ATGGCAACAAAAACTTCCAAACCACTTGCTTCACATCCTACTTACGAAGAGATGATTAAGGAAGCGATTGTGGGGCTGAAAGAGAGAACAGGTTCAAGCCAATACGCGATTGCGAAATTCATCGAAGAGAAACACAAACAGCTTCCTCCAACCTTCAAGAAACTATTGCTCCAAAACTTGAAGAAGAATGTTGCTTCTGGAAAGCTTGTTAAGGTTAAAGGCTCATTCAAGCTTTCTCCGGCGACAAAACCAACACCGGTGGCTAAAAAGCCCGCAGCTGCGAGAACGACGCCGGGGGGAAAGGTTGCTACTGCGAAGGCGGTTGTGAAGAAAGCTGTGGCGGCGAAGAAAGCTCCGGTGAAGAGCGTGAAAGCGAAAAGTGTGAAGACTCCCGTGAAGAAAGTTACGACAAAGAGAGGGGGAAGAAAATAG 432 0.4722 MATKTSKPLASHPTYEEMIKEAIVGLKERTGSSQYAIAKFIEEKHKQLPPTFKKLLLQNLKKNVASGKLVKVKGSFKLSPATKPTPVAKKPAAARTTPGGKVATAKAVVKKAVAAKKAPVKSVKAKSVKTPVKKVTTKRGGRK* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa6g1313 143 CDD H15 10 91 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1313 143 MobiDBLite consensus disorder prediction 123 143 - -
Psa6g1313 143 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1313 143 SUPERFAMILY "Winged helix" DNA-binding domain 10 87 IPR036390 -
Psa6g1313 143 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1313 143 Pfam linker histone H1 and H5 family 12 79 IPR005818 GO:0000786|GO:0003677|GO:0006334
Psa6g1313 143 MobiDBLite consensus disorder prediction 127 143 - -
Psa6g1313 143 PANTHER HISTONE H1 82 143 - -
Psa6g1313 143 PANTHER HISTONE H1 7 81 - -
Psa6g1313 143 PANTHER HISTONE H1.1 82 143 - -
Psa6g1313 143 PANTHER HISTONE H1.1 7 81 - -
Psa6g1313 143 Gene3D - 7 93 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa6g1313 Psa-Chr6 58330811 58331844 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa6g1313 16 82 Single Myb Histone (SMH) Gene Family AT1G49950 40.299 3.60e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa6g1313 K11275 - gmx:100795994 119.012